Z. japonica Nagirizaki
Zjn_sc00005.1.g01950.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G47650.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
371 |
43 |
369 |
e-180 |
119.4 |
79 |
84.9 |
| Subject |
443 |
107 |
433 |
|
| Annot |
| Symbols: UXS4 | UDP-xylose synthase 4 | chr2:19538751-19541364 REVERSE LENGTH=443 |
| NR |
tpg|DAA54401.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
371 |
1 |
371 |
0.0 |
123.2 |
90.6 |
94.6 |
| Subject |
457 |
82 |
450 |
|
| Annot |
TPA: hypothetical protein ZEAMMB73_310567 [Zea mays] |
| IRGSP |
Os05t0363200-01_chr05_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
371 |
1 |
371 |
0.0 |
120.5 |
87.3 |
91.9 |
| Subject |
447 |
59 |
439 |
|
| Annot |
|
| Sbicolor |
Sobic.003G149500.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
371 |
1 |
371 |
0.0 |
115.6 |
91.4 |
94.6 |
| Subject |
429 |
54 |
422 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00005.1.g01950.1.am.mkhc |
length: 371 aa. |
| IPR001509 |
NAD-dependent epimerase/dehydratase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0044237 |
cellular metabolic process |
|
|
| Molecular Function |
GO:0050662 |
coenzyme binding |
|
|
| HMMPfam |
PF01370 |
Epimerase |
7.4e-44 |
59-292 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
6.5e-66 |
58-224 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.25.10 |
no description |
1.9e-54 |
225-363 |
| HMMPanther |
PTHR10366 |
NAD |
9.2e-184 |
52-369 |
| HMMPanther |
PTHR10366:SF35 |
DTDP-GLUCOSE |
9.2e-184 |
52-369 |
| Seg |
seg |
seg |
NA |
3-28 |
| superfamily |
SSF51735 |
NAD(P)-binding |
1.7e-83 |
57-365 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 6 | 5363699 | 5368184 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00005.1 |
maker |
exon |
1755852 |
1756316 |
. |
+ |
. |
ID=Zjn_sc00005.1.g01950.1.am.mkhc:exon:1 |
| Zjn_sc00005.1 |
maker |
exon |
1757316 |
1757463 |
. |
+ |
. |
ID=Zjn_sc00005.1.g01950.1.am.mkhc:exon:2 |
| Zjn_sc00005.1 |
maker |
exon |
1758495 |
1758574 |
. |
+ |
. |
ID=Zjn_sc00005.1.g01950.1.am.mkhc:exon:3 |
| Zjn_sc00005.1 |
maker |
exon |
1758661 |
1758744 |
. |
+ |
. |
ID=Zjn_sc00005.1.g01950.1.am.mkhc:exon:4 |
| Zjn_sc00005.1 |
maker |
exon |
1758845 |
1758919 |
. |
+ |
. |
ID=Zjn_sc00005.1.g01950.1.am.mkhc:exon:5 |
| Zjn_sc00005.1 |
maker |
exon |
1759654 |
1760337 |
. |
+ |
. |
ID=Zjn_sc00005.1.g01950.1.am.mkhc:exon:6 |