Z. japonica Nagirizaki
Zjn_sc00005.1.g00110.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G06350.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 509 2 508 e-172 118.5 61.1 77
Subject 603 94 603
Annot | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603
NR ref|NP_001152357.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 509 1 509 0.0 100 90.6 95.5
Subject 509 1 509
Annot LOC100285997 [Zea mays] gi|195655441|gb|ACG47188.1| shikimate biosynthesis protein aroDE [Zea mays] gi|414877457|tpg|DAA54588.1| TPA: shikimate biosynthesis protein aroDE [Zea mays]
IRGSP Os01t0375200-02_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 509 1 509 0.0 100 89.4 95.3
Subject 509 1 509
Annot
Sbicolor Sobic.003G169900.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 509 1 509 0.0 100 90 94.7
Subject 509 1 509
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00005.1.g00110.1.sm.mkhc length: 509 aa.
IPR001381 Dehydroquinase class I
method AccNumber shortName E-value location
Molecular Function GO:0003855 3-dehydroquinate dehydratase activity    
HAMAP MF_00214 AroD 21.838 5-226
HMMPfam PF01487 DHquinase_I 9.8e-72 5-223
HMMTigr TIGR01093 aroD: 8e-58 4-222
IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
HMMPfam PF01488 Shikimate_DH 2e-13 354-437
IPR011342 Shikimate dehydrogenase
Molecular Function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity    
Biological Process GO:0019632 shikimate metabolic process    
Molecular Function GO:0050661 NADP binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMTigr TIGR00507 aroE: 3.6e-61 232-501
IPR013708 Shikimate dehydrogenase substrate binding, N-terminal
Molecular Function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF08501 Shikimate_dh_N 1.7e-23 236-316
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 3.4e-70 2-226
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 8.1e-42 335-507
IPR022893 Shikimate, quinate/shikimate dehydrogenase
Molecular Function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity    
Biological Process GO:0055114 oxidation-reduction process    
HAMAP MF_00222 Shikimate_DH_AroE 28.119 231-507
no_ID  
Gene3D G3DSA:3.40.192.10 no description 2.8e-35 228-334
HMMPanther PTHR21089 SHIKIMATE 4e-147 18-509
HMMPanther PTHR21089:SF0 SUBFAMILY 4e-147 18-509
Seg seg seg NA 18-29
364-381
superfamily SSF51569 Aldolase 6.3e-65 1-228
superfamily SSF51735 NAD(P)-binding 6.2e-33 340-508
superfamily SSF53223 Aminoacid 2.7e-33 221-329
Pseudomolecule
Chromosome Start End Strand
670367357051036+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00005.1 maker exon 73000 75347 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:11
Zjn_sc00005.1 maker exon 75912 75958 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:10
Zjn_sc00005.1 maker exon 76065 76230 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:9
Zjn_sc00005.1 maker exon 81143 81291 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:8
Zjn_sc00005.1 maker exon 82199 82339 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:7
Zjn_sc00005.1 maker exon 82421 82526 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:6
Zjn_sc00005.1 maker exon 82596 82659 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:5
Zjn_sc00005.1 maker exon 83229 83575 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:4
Zjn_sc00005.1 maker exon 84234 84452 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:3
Zjn_sc00005.1 maker exon 84899 85004 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:2
Zjn_sc00005.1 maker exon 87114 87301 . - . ID=Zjn_sc00005.1.g00110.1.sm.mkhc:exon:1

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