Z. japonica Nagirizaki
Zjn_sc00004.1.g14230.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G77850.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 495 3 481 2e-79 118.2 42.4 57.4
Subject 585 1 560
Annot | Symbols: ARF17 | auxin response factor 17 | chr1:29272405-29275193 FORWARD LENGTH=585
NR ref|XP_004959954.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 495 5 494 e-158 101.4 62.8 73.5
Subject 502 7 501
Annot PREDICTED: auxin response factor 13-like [Setaria italica]
IRGSP Os04t0690600-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 495 20 495 e-120 106.9 51.9 62.6
Subject 529 28 509
Annot
Sbicolor Sobic.006G278900.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 495 1 494 e-145 104.6 59 69.9
Subject 518 1 517
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g14230.1.sm.mk length: 495 aa.
IPR003340 B3 DNA binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMPfam PF02362 B3 2.8e-20 112-211
HMMSmart SM01019 B3 3.4e-15 110-212
ProfileScan PS50863 B3 12.717 110-212
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 6.1e-16 239-308
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 3.8e-32 102-213
superfamily SSF101936 DNA-binding 3.4e-29 93-254
no_ID  
HMMPanther PTHR31384 FAMILY 2.1e-110 1-342
Seg seg seg NA 5-15
96-106
378-385
Pseudomolecule
Chromosome Start End Strand
121607721816078705-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker_non_over exon 6164572 6166059 . - . ID=Zjn_sc00004.1.g14230.1.sm.mk:exon:1

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