Z. japonica Nagirizaki
Zjn_sc00004.1.g13120.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G37020.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 560 1 546 e-116 138 51.1 63.8
Subject 773 234 773
Annot | Symbols: ARF8 | auxin response factor 8 | chr5:14630151-14633916 FORWARD LENGTH=773
NR ref|XP_004960120.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 560 1 546 0.0 145.5 90 93.9
Subject 815 241 784
Annot PREDICTED: auxin response factor 12 [Setaria italica]
IRGSP Os04t0671900-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 560 1 546 0.0 146.1 87.7 93
Subject 818 243 787
Annot
Sbicolor Sobic.006G262100.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 560 1 546 0.0 146.3 90.5 94.1
Subject 819 243 788
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g13120.1.sm.mkhc length: 560 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 2.2e-15 440-546
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 3.2e-33 19-102
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 20.069 479-546
no_ID  
HMMPanther PTHR31384 FAMILY 1.1e-92 1-546
Seg seg seg NA 17-24
200-212
230-251
269-281
321-343
365-370
superfamily SSF54277 CAD 9.7e-08 466-559
Pseudomolecule
Chromosome Start End Strand
121561984715624494-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 5707201 5707853 . - . ID=Zjn_sc00004.1.g13120.1.sm.mkhc:exon:8
Zjn_sc00004.1 maker exon 5708568 5708758 . - . ID=Zjn_sc00004.1.g13120.1.sm.mkhc:exon:7
Zjn_sc00004.1 maker exon 5708829 5709820 . - . ID=Zjn_sc00004.1.g13120.1.sm.mkhc:exon:6
Zjn_sc00004.1 maker exon 5710469 5710616 . - . ID=Zjn_sc00004.1.g13120.1.sm.mkhc:exon:5
Zjn_sc00004.1 maker exon 5711014 5711089 . - . ID=Zjn_sc00004.1.g13120.1.sm.mkhc:exon:4
Zjn_sc00004.1 maker exon 5711319 5711441 . - . ID=Zjn_sc00004.1.g13120.1.sm.mkhc:exon:3
Zjn_sc00004.1 maker exon 5711518 5711682 . - . ID=Zjn_sc00004.1.g13120.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 5711757 5711848 . - . ID=Zjn_sc00004.1.g13120.1.sm.mkhc:exon:1

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