Z. japonica Nagirizaki
Zjn_sc00004.1.g12910.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G64230.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 148 1 148 1e-82 100 95.9 98.6
Subject 148 1 148
Annot | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148
NR ref|NP_001054191.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 148 1 148 6e-82 100 100 100
Subject 148 1 148
Annot Os04g0667800 [Oryza sativa Japonica Group] gi|226492411|ref|NP_001148222.1| ubiquitin-conjugating enzyme E2-17 kDa [Zea mays] gi|350536019|ref|NP_001232817.1| ubiquitin-conjugating enzyme E2-17 kDa [Zea mays] gi|242077578|ref|XP_002448725.1| hypothetical protein SORBIDRAFT_06g032120 [Sorghum bicolor] gi|32488376|emb|CAE02801.1| OSJNBa0043A12.6 [Oryza sativa Japonica Group] gi|90399233|emb|CAH68307.1| B0811B10.8 [Oryza sativa Indica Group] gi|113565762|dbj|BAF16105.1| Os04g0667800 [Oryza sativa Japonica Group] gi|116308863|emb|CAH66000.1| H1005F08.29 [Oryza sativa Indica Group] gi|125550147|gb|EAY95969.1| hypothetical protein OsI_17840 [Oryza sativa Indica Group] gi|195616786|gb|ACG30223.1| ubiquitin-conjugating enzyme E2-17 kDa [Zea mays] gi|195617724|gb|ACG30692.1| ubiquitin-conjugating enzyme E2-17 kDa [Zea mays] gi|195637808|gb|ACG38372.1| ubiquitin-conjugating enzyme E2-17 kDa [Zea mays] gi|215767514|dbj|BAG99742.1| unnamed protein product [Oryza sativa Japonica Group] gi|238012450|gb|ACR37260.1| unknown [Zea mays] gi|241939908|gb|EES13053.1| hypothetical protein SORBIDRAFT_06g032120 [Sorghum bicolor] gi|359359047|gb|AEV40954.1| putative ubiquitin-conjugating enzyme [Oryza punctata] gi|359359098|gb|AEV41004.1| putative ubiquitin-conjugating enzyme [Oryza minuta] gi|359359147|gb|AEV41052.1| putative ubiquitin-conjugating enzyme [Oryza minuta] gi|359359193|gb|AEV41097.1| putative ubiquitin-conjugating enzyme [Oryza officinalis] gi|414584895|tpg|DAA35466.1| TPA: putative ubiquitin-conjugating enzyme family isoform 1 [Zea mays] gi|414584896|tpg|DAA35467.1| TPA: putative ubiquitin-conjugating enzyme family isoform 2 [Zea mays] gi|614500799|gb|AHX42565.1| ubiquitin-conjugating enzyme [Saccharum hybrid cultivar ROC22]
IRGSP Os04t0667800-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 148 1 148 6e-85 100 100 100
Subject 148 1 148
Annot
Sbicolor Sobic.006G257900.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 148 1 148 7e-85 100 100 100
Subject 148 1 148
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g12910.1.sm.mkhc length: 148 aa.
IPR000608 Ubiquitin-conjugating enzyme, E2
method AccNumber shortName E-value location
Molecular Function GO:0016881 acid-amino acid ligase activity    
HMMPfam PF00179 UQ_con 9.3e-53 5-141
ProfileScan PS50127 UBIQUITIN_CONJUGAT_2 48.280 4-136
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
Gene3D G3DSA:3.10.110.10 no description 4.2e-81 1-147
superfamily SSF54495 UBC-like 1.7e-65 1-148
IPR023313 Ubiquitin-conjugating enzyme, active site
PatternScan PS00183 UBIQUITIN_CONJUGAT_1 NA 74-89
no_ID  
HMMPanther PTHR24068 FAMILY 6e-116 1-147
HMMSmart SM00212 Ubiquitin-conjugating 3e-79 4-147
Pseudomolecule
Chromosome Start End Strand
121553693615539229-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 5624290 5625073 . - . ID=Zjn_sc00004.1.g12910.1.sm.mkhc:exon:5
Zjn_sc00004.1 maker exon 5625141 5625245 . - . ID=Zjn_sc00004.1.g12910.1.sm.mkhc:exon:4
Zjn_sc00004.1 maker exon 5625562 5625689 . - . ID=Zjn_sc00004.1.g12910.1.sm.mkhc:exon:3
Zjn_sc00004.1 maker exon 5626345 5626424 . - . ID=Zjn_sc00004.1.g12910.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 5626509 5626583 . - . ID=Zjn_sc00004.1.g12910.1.sm.mkhc:exon:1

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