Z. japonica Nagirizaki
Zjn_sc00004.1.g12290.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
No_hits |
| NR |
ref|XP_006652944.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
107 |
3 |
107 |
7e-21 |
319.6 |
66.4 |
82.2 |
| Subject |
342 |
153 |
342 |
|
| Annot |
PREDICTED: farnesyl pyrophosphate synthase-like [Oryza brachyantha] |
| IRGSP |
Os04t0657100-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
107 |
3 |
107 |
2e-26 |
366.4 |
77.6 |
82.2 |
| Subject |
392 |
203 |
392 |
|
| Annot |
|
| Sbicolor |
Sobic.006G248000.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
107 |
3 |
107 |
4e-31 |
378.5 |
82.2 |
87.9 |
| Subject |
405 |
216 |
405 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00004.1.g12290.1.sm.mk |
length: 107 aa. |
| IPR008949 |
Terpenoid synthase |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.10.600.10 |
no description |
3.2e-08 |
4-50 |
| superfamily |
SSF48576 |
Terpenoid |
3.9e-10 |
1-107 |
| no_ID |
|
| HMMPanther |
PTHR11525 |
FARNESYL-PYROPHOSPHATE |
1.4e-13 |
3-65 |
| HMMPanther |
PTHR11525:SF0 |
SUBFAMILY |
1.4e-13 |
3-65 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 15266688 | 15268177 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00004.1 |
maker_non_over |
exon |
5354042 |
5354170 |
. |
- |
. |
ID=Zjn_sc00004.1.g12290.1.sm.mk:exon:5 |
| Zjn_sc00004.1 |
maker_non_over |
exon |
5354671 |
5354715 |
. |
- |
. |
ID=Zjn_sc00004.1.g12290.1.sm.mk:exon:4 |
| Zjn_sc00004.1 |
maker_non_over |
exon |
5355119 |
5355170 |
. |
- |
. |
ID=Zjn_sc00004.1.g12290.1.sm.mk:exon:3 |
| Zjn_sc00004.1 |
maker_non_over |
exon |
5355250 |
5355341 |
. |
- |
. |
ID=Zjn_sc00004.1.g12290.1.sm.mk:exon:2 |
| Zjn_sc00004.1 |
maker_non_over |
exon |
5355526 |
5355531 |
. |
- |
. |
ID=Zjn_sc00004.1.g12290.1.sm.mk:exon:1 |