Z. japonica Nagirizaki
Zjn_sc00004.1.g11310.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G21940.5 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 256 67 253 5e-63 118.4 44.1 58.6
Subject 303 109 296
Annot | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=303
NR ref|XP_004976990.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 256 1 256 e-109 116 83.2 90.2
Subject 297 1 297
Annot PREDICTED: shikimate kinase 3, chloroplastic [Setaria italica]
IRGSP Os06t0225800-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 256 61 252 1e-83 103.1 57 65.6
Subject 264 52 243
Annot
Sbicolor Sobic.006G235500.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 256 1 256 e-106 117.2 80.1 87.5
Subject 300 1 300
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g11310.1.sm.mkhc length: 256 aa.
IPR000623 Shikimate kinase/Threonine synthase-like 1
method AccNumber shortName E-value location
FPrintScan PR01100 SHIKIMTKNASE 3.8e-21 63-78
87-100
116-124
134-143
154-171
HAMAP MF_00109 Shikimate_kinase 23.515 60-245
HMMPfam PF01202 SKI 3.3e-42 69-222
IPR023000 Shikimate kinase, conserved site
PatternScan PS01128 SHIKIMATE_KINASE NA 117-142
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.7e-22 67-232
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.6e-43 67-230
HMMPanther PTHR21087 SHIKIMATE 3e-46 67-219
Pseudomolecule
Chromosome Start End Strand
121483890114843890-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 4926255 4928368 . - . ID=Zjn_sc00004.1.g11310.1.sm.mkhc:exon:8
Zjn_sc00004.1 maker exon 4928458 4928522 . - . ID=Zjn_sc00004.1.g11310.1.sm.mkhc:exon:7
Zjn_sc00004.1 maker exon 4928672 4928750 . - . ID=Zjn_sc00004.1.g11310.1.sm.mkhc:exon:6
Zjn_sc00004.1 maker exon 4928862 4928991 . - . ID=Zjn_sc00004.1.g11310.1.sm.mkhc:exon:5
Zjn_sc00004.1 maker exon 4929058 4929140 . - . ID=Zjn_sc00004.1.g11310.1.sm.mkhc:exon:4
Zjn_sc00004.1 maker exon 4929365 4929452 . - . ID=Zjn_sc00004.1.g11310.1.sm.mkhc:exon:3
Zjn_sc00004.1 maker exon 4929569 4929641 . - . ID=Zjn_sc00004.1.g11310.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 4930738 4931244 . - . ID=Zjn_sc00004.1.g11310.1.sm.mkhc:exon:1

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