Z. japonica Nagirizaki
Zjn_sc00004.1.g10440.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G18360.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 588 4 365 e-177 62.6 50.2 55.4
Subject 368 3 356
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr4:10146141-10148386 REVERSE LENGTH=368
NR ref|XP_002447118.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 588 1 376 0.0 62.4 57.3 60.7
Subject 367 1 367
Annot hypothetical protein SORBIDRAFT_06g028990 [Sorghum bicolor] gi|241938301|gb|EES11446.1| hypothetical protein SORBIDRAFT_06g028990 [Sorghum bicolor]
IRGSP Os04t0623500-02_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 588 1 376 0.0 62.4 56.8 60.2
Subject 367 1 367
Annot
Sbicolor Sobic.006G220500.2.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 588 1 376 0.0 62.4 57.3 60.7
Subject 367 1 367
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g10440.1.sm.mkhc length: 588 aa.
IPR000262 FMN-dependent dehydrogenase
method AccNumber shortName E-value location
Molecular Function GO:0016491 oxidoreductase activity    
HMMPfam PF01070 FMN_dh 6.8e-10 14-364
377-422
IPR003210 Signal recognition particle, SRP14 subunit
Cellular Component GO:0005786 signal recognition particle, endoplasmic reticulum targeting    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Molecular Function GO:0008312 7S RNA binding    
Molecular Function GO:0030942 endoplasmic reticulum signal peptide binding    
BlastProDom PD009170 Q7XPR3_ORYSA_Q7XPR3; 7e-26 458-528
HMMPfam PF02290 SRP14 1.7e-23 461-550
IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00557 FMN_HYDROXY_ACID_DH_1 NA 261-267
IPR009018 Signal recognition particle, SRP9/SRP14 subunit
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Molecular Function GO:0008312 7S RNA binding    
Cellular Component GO:0048500 signal recognition particle    
Gene3D G3DSA:3.30.720.10 no description 5e-32 458-581
superfamily SSF54762 Signal 2.6e-28 458-553
IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent
Molecular Function GO:0010181 FMN binding    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
ProfileScan PS51349 FMN_HYDROXY_ACID_DH_2 113.889 1-368
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 6.5e-12 4-366
377-425
no_ID  
HMMPanther PTHR10578 (S)-2-HYDROXY-ACID 9.4e-183 1-384
HMMPanther PTHR10578:SF9 (S)-2-HYDROXY-ACID 9.4e-183 1-384
Seg seg seg NA 92-100
446-455
570-588
superfamily SSF51395 FMN-linked 4.1e-09 3-366
377-424
Pseudomolecule
Chromosome Start End Strand
121448355014502170-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 4570904 4571491 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:31
Zjn_sc00004.1 maker exon 4573069 4573178 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:30
Zjn_sc00004.1 maker exon 4573268 4573361 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:29
Zjn_sc00004.1 maker exon 4573557 4573632 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:28
Zjn_sc00004.1 maker exon 4574174 4574344 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:27
Zjn_sc00004.1 maker exon 4578156 4578337 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:26
Zjn_sc00004.1 maker exon 4578435 4578539 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:25
Zjn_sc00004.1 maker exon 4578710 4578834 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:24
Zjn_sc00004.1 maker exon 4578907 4578976 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:23
Zjn_sc00004.1 maker exon 4579128 4579190 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:22
Zjn_sc00004.1 maker exon 4579277 4579343 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:21
Zjn_sc00004.1 maker exon 4579442 4579566 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:20
Zjn_sc00004.1 maker exon 4579660 4579737 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:19
Zjn_sc00004.1 maker exon 4579825 4579871 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:18
Zjn_sc00004.1 maker exon 4579949 4580073 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:17
Zjn_sc00004.1 maker exon 4580801 4580944 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:16
Zjn_sc00004.1 maker exon 4581292 4582383 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:15
Zjn_sc00004.1 maker exon 4582464 4582587 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:14
Zjn_sc00004.1 maker exon 4582670 4582781 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:13
Zjn_sc00004.1 maker exon 4582864 4582995 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:12
Zjn_sc00004.1 maker exon 4583096 4583278 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:11
Zjn_sc00004.1 maker exon 4583586 4583714 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:10
Zjn_sc00004.1 maker exon 4583797 4583967 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:9
Zjn_sc00004.1 maker exon 4584187 4584289 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:8
Zjn_sc00004.1 maker exon 4584685 4584794 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:7
Zjn_sc00004.1 maker exon 4585359 4585466 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:6
Zjn_sc00004.1 maker exon 4585770 4585945 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:5
Zjn_sc00004.1 maker exon 4586377 4586647 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:4
Zjn_sc00004.1 maker exon 4586798 4587012 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:3
Zjn_sc00004.1 maker exon 4587545 4588897 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 4588979 4589524 . - . ID=Zjn_sc00004.1.g10440.1.sm.mkhc:exon:1

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