Z. japonica Nagirizaki
Zjn_sc00004.1.g10150.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G20460.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
244 |
64 |
244 |
7e-85 |
168.4 |
59 |
67.2 |
| Subject |
411 |
232 |
411 |
|
| Annot |
| Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:11029767-11031765 REVERSE LENGTH=411 |
| NR |
emb|CAJ86127.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
244 |
62 |
244 |
3e-88 |
167.2 |
64.8 |
66.8 |
| Subject |
408 |
228 |
408 |
|
| Annot |
H0313F03.11 [Oryza sativa Indica Group] |
| IRGSP |
Os04t0618200-02_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
244 |
62 |
244 |
1e-89 |
160.2 |
63.9 |
66 |
| Subject |
391 |
211 |
391 |
|
| Annot |
|
| Sbicolor |
Sobic.006G217300.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
244 |
67 |
244 |
6e-87 |
170.1 |
61.1 |
65.6 |
| Subject |
415 |
240 |
415 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00004.1.g10150.1.sm.mkhc |
length: 244 aa. |
| IPR001509 |
NAD-dependent epimerase/dehydratase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0044237 |
cellular metabolic process |
|
|
| Molecular Function |
GO:0050662 |
coenzyme binding |
|
|
| HMMPfam |
PF01370 |
Epimerase |
1e-05 |
78-166 |
| IPR005886 |
UDP-glucose 4-epimerase GalE |
| Molecular Function |
GO:0003978 |
UDP-glucose 4-epimerase activity |
|
|
| Biological Process |
GO:0006012 |
galactose metabolic process |
|
|
| HMMPanther |
PTHR10366:SF39 |
UDP-GLUCOSE |
8.8e-79 |
78-243 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
4.8e-06 |
131-167 |
| IPR025308 |
UDP-glucose 4-epimerase C-terminal domain |
| HMMPfam |
PF13950 |
Epimerase_Csub |
1.5e-17 |
180-241 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.25.10 |
no description |
1.3e-37 |
168-243 |
| HMMPanther |
PTHR10366 |
NAD |
8.8e-79 |
78-243 |
| superfamily |
SSF51735 |
NAD(P)-binding |
2.1e-30 |
78-243 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 14350374 | 14354092 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00004.1 |
maker |
exon |
4437728 |
4437848 |
. |
+ |
. |
ID=Zjn_sc00004.1.g10150.1.sm.mkhc:exon:1 |
| Zjn_sc00004.1 |
maker |
exon |
4438170 |
4438293 |
. |
+ |
. |
ID=Zjn_sc00004.1.g10150.1.sm.mkhc:exon:2 |
| Zjn_sc00004.1 |
maker |
exon |
4438592 |
4438716 |
. |
+ |
. |
ID=Zjn_sc00004.1.g10150.1.sm.mkhc:exon:3 |
| Zjn_sc00004.1 |
maker |
exon |
4439273 |
4439319 |
. |
+ |
. |
ID=Zjn_sc00004.1.g10150.1.sm.mkhc:exon:4 |
| Zjn_sc00004.1 |
maker |
exon |
4440160 |
4440289 |
. |
+ |
. |
ID=Zjn_sc00004.1.g10150.1.sm.mkhc:exon:5 |
| Zjn_sc00004.1 |
maker |
exon |
4440385 |
4440529 |
. |
+ |
. |
ID=Zjn_sc00004.1.g10150.1.sm.mkhc:exon:6 |
| Zjn_sc00004.1 |
maker |
exon |
4440642 |
4441446 |
. |
+ |
. |
ID=Zjn_sc00004.1.g10150.1.sm.mkhc:exon:7 |