Z. japonica Nagirizaki
Zjn_sc00004.1.g07890.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G11280.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 565 50 518 e-171 87.6 51.2 60.7
Subject 495 9 445
Annot | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 | chr4:6864168-6865922 FORWARD LENGTH=495
NR ref|XP_008669001.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 565 54 563 0.0 85.8 72.6 77.9
Subject 485 9 484
Annot PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like [Zea mays] gi|38607357|gb|AAR25558.1| acc synthase [Zea mays] gi|414585790|tpg|DAA36361.1| TPA: acc synthase [Zea mays]
IRGSP Os04t0578000-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 565 54 565 0.0 85.5 68.7 74.9
Subject 483 7 483
Annot
Sbicolor Sobic.006G187900.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 565 51 563 0.0 86.9 72 76.6
Subject 491 8 490
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g07890.1.am.mk length: 565 aa.
IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0009058 biosynthetic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00105 AA_TRANSFER_CLASS_1 NA 351-364
IPR004839 Aminotransferase, class I/classII
Biological Process GO:0009058 biosynthetic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
HMMPfam PF00155 Aminotran_1_2 8.7e-96 139-506
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 1.3e-67 169-307
327-513
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 7.6e-113 55-512
no_ID  
FPrintScan PR00753 ACCSYNTHASE 2.1e-96 127-153
160-176
197-217
219-240
273-297
309-332
345-369
377-400
HMMPanther PTHR11751 SUBGROUP 2.6e-195 58-517
HMMPanther PTHR11751:SF26 ACC 2.6e-195 58-517
Seg seg seg NA 540-549
Pseudomolecule
Chromosome Start End Strand
121333688313339538-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker_non_over exon 3424237 3425242 . - . ID=Zjn_sc00004.1.g07890.1.am.mk:exon:4
Zjn_sc00004.1 maker_non_over exon 3425730 3425890 . - . ID=Zjn_sc00004.1.g07890.1.am.mk:exon:3
Zjn_sc00004.1 maker_non_over exon 3426193 3426566 . - . ID=Zjn_sc00004.1.g07890.1.am.mk:exon:2
Zjn_sc00004.1 maker_non_over exon 3426736 3426892 . - . ID=Zjn_sc00004.1.g07890.1.am.mk:exon:1

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