Z. japonica Nagirizaki
Zjn_sc00004.1.g07380.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G02080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 159 317 2e-74 157.3 37.2 42.7
Subject 516 46 196
Annot | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain 4 | chr2:518328-521170 REVERSE LENGTH=516
NR ref|XP_002446943.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 109 317 4e-95 182.6 54.9 56.4
Subject 599 1 202
Annot hypothetical protein SORBIDRAFT_06g025550 [Sorghum bicolor] gi|241938126|gb|EES11271.1| hypothetical protein SORBIDRAFT_06g025550 [Sorghum bicolor]
IRGSP Os04t0566400-02_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 117 317 6e-85 186.9 50 51.2
Subject 613 13 211
Annot
Sbicolor Sobic.006G180900.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 109 317 4e-98 182.6 54.9 56.4
Subject 599 1 202
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g07380.1.sm.mkhc length: 328 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 205-225
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.970 203-225
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00064 202-225
268-301
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.4e+02 203-225
245-275
280-300
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 5.3e-117 164-317
HMMPanther PTHR10593:SF17 SUBFAMILY 5.3e-117 164-317
Seg seg seg NA 9-20
44-58
139-166
superfamily SSF57667 C2H2 1.6e-08 201-301
Pseudomolecule
Chromosome Start End Strand
121306934813072384+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 3156702 3156844 . + . ID=Zjn_sc00004.1.g07380.1.sm.mkhc:exon:1
Zjn_sc00004.1 maker exon 3157088 3157176 . + . ID=Zjn_sc00004.1.g07380.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 3157667 3157739 . + . ID=Zjn_sc00004.1.g07380.1.sm.mkhc:exon:3
Zjn_sc00004.1 maker exon 3157762 3158006 . + . ID=Zjn_sc00004.1.g07380.1.sm.mkhc:exon:4
Zjn_sc00004.1 maker exon 3159302 3159738 . + . ID=Zjn_sc00004.1.g07380.1.sm.mkhc:exon:5

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