Z. japonica Nagirizaki
Zjn_sc00004.1.g06600.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G44990.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 377 1 376 e-105 166.8 49.3 69
Subject 629 258 619
Annot | Symbols: CCD7, MAX3, ATCCD7 | carotenoid cleavage dioxygenase 7 | chr2:18558938-18561621 FORWARD LENGTH=629
NR ref|XP_002446902.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 377 1 377 0.0 164.7 83.8 88.3
Subject 621 267 621
Annot hypothetical protein SORBIDRAFT_06g024560 [Sorghum bicolor] gi|241938085|gb|EES11230.1| hypothetical protein SORBIDRAFT_06g024560 [Sorghum bicolor]
IRGSP Os04t0550600-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 377 1 377 e-177 161.5 79.3 85.7
Subject 609 255 609
Annot
Sbicolor Sobic.006G170300.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 377 1 377 0.0 175.1 83.8 88.3
Subject 660 306 660
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g06600.1.sm.mkhc length: 377 aa.
IPR004294 Carotenoid oxygenase
method AccNumber shortName E-value location
HMMPanther PTHR10543 BETA-CAROTENE 8.6e-122 1-377
HMMPfam PF03055 RPE65 4e-64 5-376
no_ID  
HMMPanther PTHR10543:SF24 SUBFAMILY 8.6e-122 1-377
Seg seg seg NA 286-297
Pseudomolecule
Chromosome Start End Strand
121273069312734102+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 2818047 2818164 . + . ID=Zjn_sc00004.1.g06600.1.sm.mkhc:exon:1
Zjn_sc00004.1 maker exon 2818271 2818402 . + . ID=Zjn_sc00004.1.g06600.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 2818525 2818863 . + . ID=Zjn_sc00004.1.g06600.1.sm.mkhc:exon:3
Zjn_sc00004.1 maker exon 2818898 2818980 . + . ID=Zjn_sc00004.1.g06600.1.sm.mkhc:exon:4
Zjn_sc00004.1 maker exon 2819065 2819382 . + . ID=Zjn_sc00004.1.g06600.1.sm.mkhc:exon:5
Zjn_sc00004.1 maker exon 2819482 2821456 . + . ID=Zjn_sc00004.1.g06600.1.sm.mkhc:exon:6

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