Z. japonica Nagirizaki
Zjn_sc00004.1.g06540.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G44940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 375 103 238 1e-38 78.7 24 26.9
Subject 295 94 258
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:18537294-18538181 FORWARD LENGTH=295
NR ref|XP_004976433.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 375 1 270 1e-62 80.3 52 58.4
Subject 301 3 298
Annot PREDICTED: ethylene-responsive transcription factor TINY-like [Setaria italica]
IRGSP Os04t0549700-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 375 1 270 3e-54 75.7 46.4 52.5
Subject 284 1 281
Annot
Sbicolor Sobic.006G169900.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 375 26 270 4e-58 83.5 46.7 50.9
Subject 313 24 310
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g06540.1.am.mk length: 375 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1e-10 109-120
131-147
Gene3D G3DSA:3.30.730.10 no description 2.4e-31 108-166
HMMPfam PF00847 AP2 1.7e-16 107-157
HMMSmart SM00380 DNA-binding 7.3e-38 108-171
ProfileScan PS51032 AP2_ERF 24.118 108-165
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 6.7e-24 107-168
no_ID  
HMMPanther PTHR31985 FAMILY 1.7e-77 86-275
Seg seg seg NA 10-24
58-70
82-98
175-198
229-243
320-331
359-375
Pseudomolecule
Chromosome Start End Strand
121270280712705817+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker_non_over exon 2790161 2790969 . + . ID=Zjn_sc00004.1.g06540.1.am.mk:exon:1
Zjn_sc00004.1 maker_non_over exon 2792742 2792837 . + . ID=Zjn_sc00004.1.g06540.1.am.mk:exon:2
Zjn_sc00004.1 maker_non_over exon 2792949 2793171 . + . ID=Zjn_sc00004.1.g06540.1.am.mk:exon:3

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