Z. japonica Nagirizaki
Zjn_sc00004.1.g06320.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G17500.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 293 1 203 2e-44 91.5 35.5 45.4
Subject 268 3 210
Annot | Symbols: ATERF-1, ERF-1 | ethylene responsive element binding factor 1 | chr4:9759405-9760211 FORWARD LENGTH=268
NR gb|ABQ52686.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 293 1 293 1e-94 99.7 76.8 82.6
Subject 292 1 292
Annot ethylene-responsive factor [Thinopyrum intermedium]
IRGSP Os04t0546800-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 293 2 293 6e-88 108.5 72 80.2
Subject 318 6 318
Annot
Sbicolor Sobic.006G167800.2.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 293 1 293 5e-92 100 75.4 78.8
Subject 293 1 293
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g06320.1.am.mk length: 293 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 9.9e-11 141-152
164-180
Gene3D G3DSA:3.30.730.10 no description 4.9e-31 139-198
HMMPfam PF00847 AP2 1.1e-17 140-190
HMMSmart SM00380 DNA-binding 1.4e-38 140-204
ProfileScan PS51032 AP2_ERF 24.250 140-198
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.1e-25 139-201
no_ID  
HMMPanther PTHR31190 FAMILY 1.1e-26 112-259
HMMPanther PTHR31190:SF0 SUBFAMILY 1.1e-26 112-259
Seg seg seg NA 98-109
174-187
206-214
226-243
Pseudomolecule
Chromosome Start End Strand
121263473712635618-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker_non_over exon 2722091 2722972 . - . ID=Zjn_sc00004.1.g06320.1.am.mk:exon:1

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