Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00004.1.g06090.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00004.1)

BLAST

TAIR10	AT5G24380.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	710	44	707	0.0	93.5	61.4	77.3
		Subject	664	2	661
		Annot	\| Symbols: YSL2, ATYSL2 \| YELLOW STRIPE like 2 \| chr5:8324098-8326525 FORWARD LENGTH=664
NR	ref\|XP_008661599.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	710	5	710	0.0	102.4	85.6	91.3
		Subject	727	24	727
		Annot	PREDICTED: uncharacterized protein LOC100273385 isoform X1 [Zea mays] gi\|670442494\|ref\|XP_008661600.1\| PREDICTED: uncharacterized protein LOC100273385 isoform X1 [Zea mays] gi\|413919097\|gb\|AFW59029.1\| hypothetical protein ZEAMMB73_172012 [Zea mays]
IRGSP	Os04t0542800-01_chr04_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	710	35	710	0.0	95.1	82	89.4
		Subject	675	1	675
		Annot
Sbicolor	Sobic.006G164300.1.p\|Chr06\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	710	1	710	0.0	100.1	86.3	92
		Subject	711	1	711
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004813	Oligopeptide transporter, OPT superfamily
Zjn_sc00004.1.g06090.1.sm.mkhc				length: 710 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF03169	OPT	1.3e-137	80-693
HMMTigr	TIGR00728	OPT_sfam:	2.3e-115	75-690
no_ID
HMMPanther	PTHR31645	FAMILY	4e-292	47-708
HMMPanther	PTHR31645:SF0	SUBFAMILY	4e-292	47-708
Seg	seg	seg	NA	2-26 60-73 161-173 211-225 385-402

Pseudomolecule

Chromosome	Start	End	Strand
12	12565562	12568517	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00004.1	maker	exon	2652916	2653844	.	-	.	ID=Zjn_sc00004.1.g06090.1.sm.mkhc:exon:7
Zjn_sc00004.1	maker	exon	2653927	2654044	.	-	.	ID=Zjn_sc00004.1.g06090.1.sm.mkhc:exon:6
Zjn_sc00004.1	maker	exon	2654131	2654320	.	-	.	ID=Zjn_sc00004.1.g06090.1.sm.mkhc:exon:5
Zjn_sc00004.1	maker	exon	2654416	2654550	.	-	.	ID=Zjn_sc00004.1.g06090.1.sm.mkhc:exon:4
Zjn_sc00004.1	maker	exon	2654684	2654781	.	-	.	ID=Zjn_sc00004.1.g06090.1.sm.mkhc:exon:3
Zjn_sc00004.1	maker	exon	2655091	2655263	.	-	.	ID=Zjn_sc00004.1.g06090.1.sm.mkhc:exon:2
Zjn_sc00004.1	maker	exon	2655382	2655871	.	-	.	ID=Zjn_sc00004.1.g06090.1.sm.mkhc:exon:1