Z. japonica Nagirizaki
Zjn_sc00004.1.g05830.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G31810.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
219 |
59 |
192 |
9e-55 |
561.6 |
52.1 |
55.7 |
| Subject |
1230 |
986 |
1169 |
|
| Annot |
| Symbols: AFH14 | Formin Homology 14 | chr1:11399922-11405761 REVERSE LENGTH=1230 |
| NR |
ref|XP_002444447.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
219 |
59 |
192 |
2e-62 |
147 |
59.8 |
60.7 |
| Subject |
322 |
97 |
280 |
|
| Annot |
hypothetical protein SORBIDRAFT_07g022080 [Sorghum bicolor] gi|241940797|gb|EES13942.1| hypothetical protein SORBIDRAFT_07g022080 [Sorghum bicolor] |
| IRGSP |
Os10t0119300-01_chr10_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
219 |
59 |
206 |
6e-65 |
190.4 |
60.7 |
63.9 |
| Subject |
417 |
188 |
382 |
|
| Annot |
|
| Sbicolor |
Sobic.007G146100.1.p|Chr07|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
219 |
59 |
192 |
6e-65 |
552.5 |
59.8 |
60.7 |
| Subject |
1210 |
985 |
1168 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00004.1.g05830.1.sm.mkhc |
length: 219 aa. |
| IPR015425 |
Formin, FH2 domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF02181 |
FH2 |
5e-36 |
59-158 |
| ProfileScan |
PS51444 |
FH2 |
22.740 |
1-219 |
| superfamily |
SSF101447 |
Formin |
1.6e-34 |
57-192 |
| IPR027643 |
Formin-like family, viridiplantae |
| Cellular Component |
GO:0005884 |
actin filament |
|
|
| Biological Process |
GO:0045010 |
actin nucleation |
|
|
| HMMPanther |
PTHR23213:SF18 |
FORMIN-RELATED |
2.2e-49 |
59-192 |
| no_ID |
|
| HMMPanther |
PTHR23213 |
FORMIN-RELATED |
2.2e-49 |
59-192 |
| Seg |
seg |
seg |
NA |
204-219 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 12469505 | 12474640 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00004.1 |
maker |
exon |
2556859 |
2557231 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:1 |
| Zjn_sc00004.1 |
maker |
exon |
2557540 |
2557663 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:2 |
| Zjn_sc00004.1 |
maker |
exon |
2558915 |
2558965 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:3 |
| Zjn_sc00004.1 |
maker |
exon |
2559041 |
2559122 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:4 |
| Zjn_sc00004.1 |
maker |
exon |
2559350 |
2559444 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:5 |
| Zjn_sc00004.1 |
maker |
exon |
2559638 |
2559709 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:6 |
| Zjn_sc00004.1 |
maker |
exon |
2560198 |
2560233 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:7 |
| Zjn_sc00004.1 |
maker |
exon |
2560338 |
2560404 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:8 |
| Zjn_sc00004.1 |
maker |
exon |
2561195 |
2561994 |
. |
+ |
. |
ID=Zjn_sc00004.1.g05830.1.sm.mkhc:exon:9 |