Z. japonica Nagirizaki
Zjn_sc00004.1.g04630.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G37210.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 247 22 222 5e-97 87 67.6 74.1
Subject 215 11 211
Annot | Symbols: | lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215
NR ref|NP_001053328.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 247 2 247 e-119 101.2 86.6 91.9
Subject 250 8 250
Annot Os04g0518800 [Oryza sativa Japonica Group] gi|122228380|sp|Q0JBP5.1|LOGL6_ORYSJ RecName: Full=Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6; AltName: Full=Protein LONELY GUY-like 6 gi|113564899|dbj|BAF15242.1| Os04g0518800 [Oryza sativa Japonica Group] gi|829489293|gb|AKL71571.1| An-2 [Oryza rufipogon] gi|846579372|gb|AKN21058.1| long and barbed awn 1 [Oryza rufipogon]
IRGSP Os04t0518800-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 247 2 247 e-122 101.2 86.6 91.9
Subject 250 8 250
Annot
Sbicolor Sobic.006G149300.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 247 13 247 e-121 104.9 85.8 90.7
Subject 259 23 259
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g04630.1.am.mkhc length: 247 aa.
IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
method AccNumber shortName E-value location
HMMPfam PF03641 Lysine_decarbox 2.6e-46 69-199
HMMTigr TIGR00730 TIGR00730: 1.1e-60 26-202
no_ID  
Gene3D G3DSA:3.40.50.450 no description 1.3e-89 19-201
HMMPanther PTHR31223 FAMILY 1.5e-110 20-232
Seg seg seg NA 59-72
93-104
superfamily SSF102405 MoCo 7.7e-68 20-203
Pseudomolecule
Chromosome Start End Strand
121196476911967844+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 2052123 2052498 . + . ID=Zjn_sc00004.1.g04630.1.am.mkhc:exon:1
Zjn_sc00004.1 maker exon 2053302 2053399 . + . ID=Zjn_sc00004.1.g04630.1.am.mkhc:exon:2
Zjn_sc00004.1 maker exon 2053561 2053591 . + . ID=Zjn_sc00004.1.g04630.1.am.mkhc:exon:3
Zjn_sc00004.1 maker exon 2054208 2054307 . + . ID=Zjn_sc00004.1.g04630.1.am.mkhc:exon:4
Zjn_sc00004.1 maker exon 2054598 2054668 . + . ID=Zjn_sc00004.1.g04630.1.am.mkhc:exon:5
Zjn_sc00004.1 maker exon 2054777 2054920 . + . ID=Zjn_sc00004.1.g04630.1.am.mkhc:exon:6
Zjn_sc00004.1 maker exon 2055055 2055198 . + . ID=Zjn_sc00004.1.g04630.1.am.mkhc:exon:7

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