Z. japonica Nagirizaki
Zjn_sc00004.1.g04570.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G37040.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
713 |
24 |
713 |
0.0 |
101.7 |
74.2 |
84.3 |
| Subject |
725 |
34 |
725 |
|
| Annot |
| Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725 |
| NR |
ref|XP_004976241.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
713 |
1 |
713 |
0.0 |
100.3 |
93.8 |
96.6 |
| Subject |
715 |
1 |
715 |
|
| Annot |
PREDICTED: phenylalanine ammonia-lyase [Setaria italica] |
| IRGSP |
Os04t0518400-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
713 |
1 |
713 |
0.0 |
100.1 |
93.4 |
96.9 |
| Subject |
714 |
1 |
714 |
|
| Annot |
|
| Sbicolor |
Sobic.006G148900.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
713 |
1 |
713 |
0.0 |
107.2 |
94.5 |
97.8 |
| Subject |
764 |
51 |
764 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00004.1.g04570.1.sm.mkhc |
length: 713 aa. |
| IPR001106 |
Aromatic amino acid lyase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| Molecular Function |
GO:0016841 |
ammonia-lyase activity |
|
|
| HMMPfam |
PF00221 |
Lyase_aromatic |
1.5e-174 |
55-547 |
| IPR005922 |
Phenylalanine ammonia-lyase |
| Cellular Component |
GO:0005737 |
cytoplasm |
|
|
| Biological Process |
GO:0006559 |
L-phenylalanine catabolic process |
|
|
| Molecular Function |
GO:0016841 |
ammonia-lyase activity |
|
|
| HMMTigr |
TIGR01226 |
phe_am_lyase: |
0 |
24-703 |
| IPR008948 |
L-Aspartase-like |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| superfamily |
SSF48557 |
L-aspartase-like |
1.8e-267 |
23-713 |
| IPR022313 |
Phenylalanine/histidine ammonia-lyases, active site |
| Molecular Function |
GO:0016841 |
ammonia-lyase activity |
|
|
| PatternScan |
PS00488 |
PAL_HISTIDASE |
NA |
195-211 |
| IPR023144 |
Phenylalanine ammonia-lyase, shielding domain |
| Gene3D |
G3DSA:1.10.274.20 |
no description |
3.3e-54 |
532-647 |
| IPR024083 |
Fumarase/histidase, N-terminal |
| Gene3D |
G3DSA:1.10.275.10 |
no description |
1e-88 |
23-258 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.200.10 |
no description |
1.9e-138 |
648-702 |
| Seg |
seg |
seg |
NA |
60-78 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 11946031 | 11948546 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00004.1 |
maker |
exon |
2033385 |
2035351 |
. |
- |
. |
ID=Zjn_sc00004.1.g04570.1.sm.mkhc:exon:2 |
| Zjn_sc00004.1 |
maker |
exon |
2035475 |
2035900 |
. |
- |
. |
ID=Zjn_sc00004.1.g04570.1.sm.mkhc:exon:1 |