Z. japonica Nagirizaki
Zjn_sc00004.1.g04560.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G37040.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 703 4 702 0.0 103.1 69.6 82.5
Subject 725 27 724
Annot | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725
NR gb|AGT17138.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 703 1 702 0.0 100 94.2 97.6
Subject 703 1 702
Annot phenylalanine ammonia-lyase [Saccharum hybrid cultivar R570]
IRGSP Os04t0518100-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 703 1 702 0.0 100.6 90.9 95.6
Subject 707 1 706
Annot
Sbicolor Sobic.006G148800.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 703 1 702 0.0 100 93.6 97.6
Subject 703 1 702
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g04560.1.sm.mkhc length: 703 aa.
IPR001106 Aromatic amino acid lyase
method AccNumber shortName E-value location
Biological Process GO:0009058 biosynthetic process    
Molecular Function GO:0016841 ammonia-lyase activity    
HMMPfam PF00221 Lyase_aromatic 2.8e-172 42-537
IPR005922 Phenylalanine ammonia-lyase
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006559 L-phenylalanine catabolic process    
Molecular Function GO:0016841 ammonia-lyase activity    
HMMTigr TIGR01226 phe_am_lyase: 0 11-693
IPR008948 L-Aspartase-like
Molecular Function GO:0003824 catalytic activity    
superfamily SSF48557 L-aspartase-like 5e-262 10-703
IPR022313 Phenylalanine/histidine ammonia-lyases, active site
Molecular Function GO:0016841 ammonia-lyase activity    
PatternScan PS00488 PAL_HISTIDASE NA 185-201
IPR023144 Phenylalanine ammonia-lyase, shielding domain
Gene3D G3DSA:1.10.274.20 no description 2.4e-48 522-637
IPR024083 Fumarase/histidase, N-terminal
Gene3D G3DSA:1.10.275.10 no description 5.9e-86 10-248
no_ID  
Gene3D G3DSA:1.20.200.10 no description 2.4e-134 638-692
Seg seg seg NA 51-68
265-276
Pseudomolecule
Chromosome Start End Strand
121193903911941789-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 2026393 2028420 . - . ID=Zjn_sc00004.1.g04560.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 2028690 2029143 . - . ID=Zjn_sc00004.1.g04560.1.sm.mkhc:exon:1

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