Z. japonica Nagirizaki
Zjn_sc00004.1.g04460.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G08630.5 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
312 |
1 |
282 |
e-122 |
110.3 |
65.7 |
77.9 |
| Subject |
344 |
1 |
282 |
|
| Annot |
| Symbols: THA1 | threonine aldolase 1 | chr1:2743948-2745685 REVERSE LENGTH=344 |
| NR |
ref|XP_008802139.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
312 |
1 |
271 |
e-131 |
115.1 |
71.5 |
80.4 |
| Subject |
359 |
1 |
271 |
|
| Annot |
PREDICTED: probable low-specificity L-threonine aldolase 1 isoform X1 [Phoenix dactylifera] |
| IRGSP |
Os04t0516600-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
312 |
1 |
271 |
e-133 |
119.2 |
78.2 |
82.4 |
| Subject |
372 |
1 |
271 |
|
| Annot |
|
| Sbicolor |
Sobic.006G147700.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
312 |
1 |
271 |
e-131 |
119.2 |
77.2 |
84 |
| Subject |
372 |
1 |
271 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00004.1.g04460.1.sm.mkhc |
length: 312 aa. |
| IPR001597 |
Aromatic amino acid beta-eliminating lyase/threonine aldolase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006520 |
cellular amino acid metabolic process |
|
|
| Molecular Function |
GO:0016829 |
lyase activity |
|
|
| HMMPfam |
PF01212 |
Beta_elim_lyase |
1.8e-86 |
7-273 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
9.8e-82 |
5-252 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
3.7e-92 |
5-271 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
18-37 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 11894859 | 11898275 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00004.1 |
maker |
exon |
1982213 |
1982491 |
. |
- |
. |
ID=Zjn_sc00004.1.g04460.1.sm.mkhc:exon:8 |
| Zjn_sc00004.1 |
maker |
exon |
1982576 |
1982610 |
. |
- |
. |
ID=Zjn_sc00004.1.g04460.1.sm.mkhc:exon:7 |
| Zjn_sc00004.1 |
maker |
exon |
1983260 |
1983392 |
. |
- |
. |
ID=Zjn_sc00004.1.g04460.1.sm.mkhc:exon:6 |
| Zjn_sc00004.1 |
maker |
exon |
1983479 |
1983550 |
. |
- |
. |
ID=Zjn_sc00004.1.g04460.1.sm.mkhc:exon:5 |
| Zjn_sc00004.1 |
maker |
exon |
1983660 |
1983710 |
. |
- |
. |
ID=Zjn_sc00004.1.g04460.1.sm.mkhc:exon:4 |
| Zjn_sc00004.1 |
maker |
exon |
1983863 |
1983974 |
. |
- |
. |
ID=Zjn_sc00004.1.g04460.1.sm.mkhc:exon:3 |
| Zjn_sc00004.1 |
maker |
exon |
1984073 |
1984549 |
. |
- |
. |
ID=Zjn_sc00004.1.g04460.1.sm.mkhc:exon:2 |
| Zjn_sc00004.1 |
maker |
exon |
1985505 |
1985629 |
. |
- |
. |
ID=Zjn_sc00004.1.g04460.1.sm.mkhc:exon:1 |