Z. japonica Nagirizaki
Zjn_sc00004.1.g03470.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G57660.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 319 6 319 2e-60 111.3 47.6 59.9
Subject 355 9 355
Annot | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:23355573-23356729 FORWARD LENGTH=355
NR ref|XP_008663359.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 319 1 318 e-130 101.3 81.2 86.5
Subject 323 1 322
Annot PREDICTED: zinc finger protein CONSTANS-LIKE 3-like [Zea mays] gi|413918802|gb|AFW58734.1| hypothetical protein ZEAMMB73_093452 [Zea mays] gi|645167718|gb|AIB05475.1| C2C2-CO-like transcription factor, partial [Zea mays]
IRGSP Os04t0497700-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 319 1 319 e-120 104.4 81.5 87.1
Subject 333 1 333
Annot
Sbicolor Sobic.006G135100.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 319 1 319 e-130 103.1 80.6 86.8
Subject 329 1 329
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g03470.1.sm.mkhc length: 319 aa.
IPR000315 Zinc finger, B-box
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00643 zf-B_box 2.6e-05 17-55
57-101
HMMSmart SM00336 B-Box-type 2.3e-09 15-59
60-102
ProfileScan PS50119 ZF_BBOX 10.608 15-59
55-102
IPR010402 CCT domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 1.3e-19 230-273
ProfileScan PS51017 CCT 16.876 230-272
no_ID  
HMMPanther PTHR31717 FAMILY 1.1e-16 17-107
HMMPanther PTHR31717:SF0 SUBFAMILY 1.1e-16 17-107
Seg seg seg NA 72-86
117-128
202-225
293-305
Pseudomolecule
Chromosome Start End Strand
121145952511460749+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 1546879 1547484 . + . ID=Zjn_sc00004.1.g03470.1.sm.mkhc:exon:1
Zjn_sc00004.1 maker exon 1547566 1548103 . + . ID=Zjn_sc00004.1.g03470.1.sm.mkhc:exon:2

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