Z. japonica Nagirizaki
Zjn_sc00004.1.g02350.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57050.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 407 26 407 0.0 114 72.7 85.7
Subject 464 83 464
Annot | Symbols: CBL | cystathionine beta-lyase | chr3:21111939-21114521 REVERSE LENGTH=464
NR ref|NP_001148100.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 407 2 407 0.0 115.5 92.6 96.6
Subject 470 66 470
Annot LOC100281708 [Zea mays] gi|194703020|gb|ACF85594.1| unknown [Zea mays] gi|195615792|gb|ACG29726.1| cystathionine gamma-synthase [Zea mays] gi|413952959|gb|AFW85608.1| cystathionine gamma-synthase isoform 1 [Zea mays] gi|413952960|gb|AFW85609.1| cystathionine gamma-synthase isoform 2 [Zea mays]
IRGSP Os06t0175800-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 407 2 406 0.0 116.7 89.4 94.1
Subject 475 70 474
Annot
Sbicolor Sobic.010G059200.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 407 2 406 0.0 123.3 90.7 95.3
Subject 502 98 501
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g02350.1.sm.mkhc length: 407 aa.
IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
method AccNumber shortName E-value location
Molecular Function GO:0030170 pyridoxal phosphate binding    
HMMPIR PIRSF001434 Cystathionine 4.2e-169 30-406
HMMPanther PTHR11808 TRANS-SULFURATION 6.1e-243 18-403
HMMPfam PF01053 Cys_Met_Meta_PP 1.8e-143 42-402
PatternScan PS00868 CYS_MET_METAB_PP NA 213-227
IPR006238 Cystathionine beta-lyase, eukaryotic
Molecular Function GO:0004121 cystathionine beta-lyase activity    
Biological Process GO:0071266 'de novo' L-methionine biosynthetic process    
HMMPanther PTHR11808:SF18 CYSTATHIONINE 6.1e-243 18-403
HMMTigr TIGR01329 cysta_beta_ly_E: 8.7e-179 31-404
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 1.9e-84 40-269
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 1.4e-48 270-403
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 4.4e-117 33-403
no_ID  
Seg seg seg NA 2-23
Pseudomolecule
Chromosome Start End Strand
1914667221470233+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 1072497 1073197 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:12
Zjn_sc00004.1 maker exon 1073338 1073440 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:11
Zjn_sc00004.1 maker exon 1073565 1073672 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:10
Zjn_sc00004.1 maker exon 1073809 1073926 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:9
Zjn_sc00004.1 maker exon 1074139 1074220 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:8
Zjn_sc00004.1 maker exon 1074307 1074403 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:7
Zjn_sc00004.1 maker exon 1074507 1074618 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:6
Zjn_sc00004.1 maker exon 1074706 1074793 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:5
Zjn_sc00004.1 maker exon 1074896 1074987 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:4
Zjn_sc00004.1 maker exon 1075058 1075128 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:3
Zjn_sc00004.1 maker exon 1075706 1075818 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 1075945 1076008 . - . ID=Zjn_sc00004.1.g02350.1.sm.mkhc:exon:1

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