Z. japonica Nagirizaki
Zjn_sc00004.1.g01630.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G12620.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 428 15 276 6e-43 190 25.9 39
Subject 813 22 302
Annot | Symbols: ORC1B, ATORC1B, UNE13 | origin of replication complex 1B | chr4:7459812-7462253 REVERSE LENGTH=813
NR ref|XP_008647760.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 428 1 251 e-105 188.8 47.2 50.7
Subject 808 1 249
Annot PREDICTED: uncharacterized protein LOC100280350 isoform X1 [Zea mays] gi|413943943|gb|AFW76592.1| hypothetical protein ZEAMMB73_942988 [Zea mays]
IRGSP No_hits
Sbicolor Sobic.010G067900.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 428 1 251 e-106 201.4 47 50.5
Subject 862 53 303
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g01630.1.sm.mk length: 428 aa.
IPR001965 Zinc finger, PHD-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 3.2e-09 153-198
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 1.8e-16 97-206
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.1e-16 138-203
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 154-197
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
HMMPfam PF00628 PHD 4.8e-09 154-199
ProfileScan PS50016 ZF_PHD_2 9.873 151-200
IPR020793 Origin recognition complex, subunit 1
Cellular Component GO:0000808 origin recognition complex    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMPanther PTHR10763:SF6 ORIGIN 9.4e-29 318-425
no_ID  
HMMPanther PTHR10763 CELL 9.4e-29 318-425
Seg seg seg NA 6-25
46-60
103-120
140-153
177-188
263-286
Pseudomolecule
Chromosome Start End Strand
1917645371770416+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker_non_over exon 772314 772323 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:9
Zjn_sc00004.1 maker_non_over exon 772632 772715 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:8
Zjn_sc00004.1 maker_non_over exon 773311 773387 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:7
Zjn_sc00004.1 maker_non_over exon 773596 773691 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:6
Zjn_sc00004.1 maker_non_over exon 773844 773914 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:5
Zjn_sc00004.1 maker_non_over exon 775044 775101 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:4
Zjn_sc00004.1 maker_non_over exon 776415 776558 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:3
Zjn_sc00004.1 maker_non_over exon 777007 777043 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:2
Zjn_sc00004.1 maker_non_over exon 777484 778193 . - . ID=Zjn_sc00004.1.g01630.1.sm.mk:exon:1

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