Z. japonica Nagirizaki
Zjn_sc00004.1.g00280.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G22540.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 118 1 82 2e-27 199.2 48.3 60.2
Subject 235 1 81
Annot | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=235
NR ref|XP_004964865.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 118 6 112 2e-37 188.1 79.7 85.6
Subject 222 3 168
Annot PREDICTED: MADS-box transcription factor 55-like [Setaria italica]
IRGSP Os02t0761000-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 118 1 113 3e-38 193.2 77.1 89.8
Subject 228 1 171
Annot
Sbicolor Sobic.004G306500.2.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 118 1 83 3e-36 147.5 61.9 68.6
Subject 174 1 87
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00004.1.g00280.1.sm.mkhc length: 118 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.5e-22 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 5e-23 10-55
HMMSmart SM00432 no description 6.6e-32 1-60
ProfileScan PS50066 MADS_BOX_2 26.366 1-54
superfamily SSF55455 SRF-like 2.4e-24 2-89
no_ID  
Coil coil coiled-coil NA 91-112
HMMPanther PTHR11945 MADS 9.6e-36 1-108
HMMPanther PTHR11945:SF19 MADS 9.6e-36 1-108
Seg seg seg NA 2-17
Pseudomolecule
Chromosome Start End Strand
1924087662414334+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00004.1 maker exon 128396 128748 . - . ID=Zjn_sc00004.1.g00280.1.sm.mkhc:exon:5
Zjn_sc00004.1 maker exon 129584 129625 . - . ID=Zjn_sc00004.1.g00280.1.sm.mkhc:exon:4
Zjn_sc00004.1 maker exon 130375 130416 . - . ID=Zjn_sc00004.1.g00280.1.sm.mkhc:exon:3
Zjn_sc00004.1 maker exon 131351 131432 . - . ID=Zjn_sc00004.1.g00280.1.sm.mkhc:exon:2
Zjn_sc00004.1 maker exon 133798 133964 . - . ID=Zjn_sc00004.1.g00280.1.sm.mkhc:exon:1

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