Z. japonica Nagirizaki
Zjn_sc00003.1.g14670.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G20960.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
308 |
28 |
201 |
1e-67 |
138.3 |
39 |
44.5 |
| Subject |
426 |
55 |
222 |
|
| Annot |
| Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr4:11212077-11213530 FORWARD LENGTH=426 |
| NR |
ref|XP_004985970.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
308 |
1 |
201 |
3e-87 |
126 |
52.3 |
56.5 |
| Subject |
388 |
1 |
192 |
|
| Annot |
PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Setaria italica] |
| IRGSP |
Os03t0117200-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
308 |
1 |
201 |
3e-75 |
137.3 |
52.3 |
55.5 |
| Subject |
423 |
28 |
227 |
|
| Annot |
|
| Sbicolor |
Sobic.001G531400.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
308 |
1 |
201 |
1e-85 |
128.6 |
51.9 |
55.5 |
| Subject |
396 |
1 |
200 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g14670.1.sm.mkhc |
length: 308 aa. |
| IPR002125 |
CMP/dCMP deaminase, zinc-binding |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| HMMPfam |
PF00383 |
dCMP_cyt_deam_1 |
2.1e-20 |
53-149 |
| IPR004794 |
Riboflavin biosynthesis protein RibD |
| Molecular Function |
GO:0008835 |
diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
|
|
| Biological Process |
GO:0009231 |
riboflavin biosynthetic process |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMTigr |
TIGR00326 |
eubact_ribD: |
6.3e-64 |
57-201 |
| IPR016192 |
APOBEC/CMP deaminase, zinc-binding |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| PatternScan |
PS00903 |
CYT_DCMP_DEAMINASES |
NA |
100-138 |
| IPR016193 |
Cytidine deaminase-like |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| superfamily |
SSF53927 |
Cytidine |
3.5e-55 |
52-196 |
| IPR024072 |
Dihydrofolate reductase-like domain |
| Gene3D |
G3DSA:3.40.430.10 |
no description |
6.4e-05 |
206-307 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.140.10 |
no description |
6e-31 |
52-193 |
| HMMPanther |
PTHR11079 |
CYTOSINE |
8e-82 |
45-202 |
| Seg |
seg |
seg |
NA |
4-15 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 17557841 | 17560078 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker |
exon |
6401078 |
6401399 |
. |
- |
. |
ID=Zjn_sc00003.1.g14670.1.sm.mkhc:exon:3 |
| Zjn_sc00003.1 |
maker |
exon |
6402176 |
6402474 |
. |
- |
. |
ID=Zjn_sc00003.1.g14670.1.sm.mkhc:exon:2 |
| Zjn_sc00003.1 |
maker |
exon |
6403010 |
6403315 |
. |
- |
. |
ID=Zjn_sc00003.1.g14670.1.sm.mkhc:exon:1 |