Z. japonica Nagirizaki
Zjn_sc00003.1.g14560.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G11820.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 5 104 2e-42 193.7 33.2 36.1
Subject 461 2 101
Annot | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461
NR ref|XP_002468628.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 125 238 6e-55 195 42.9 45.4
Subject 464 351 464
Annot hypothetical protein SORBIDRAFT_01g049310 [Sorghum bicolor] gi|241922482|gb|EER95626.1| hypothetical protein SORBIDRAFT_01g049310 [Sorghum bicolor]
IRGSP Os03t0118800-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 125 238 3e-51 194.5 40.3 42
Subject 463 351 463
Annot
Sbicolor Sobic.001G530100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 125 238 1e-57 273.9 42.9 45.4
Subject 652 539 652
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g14560.1.sm.mkhc length: 238 aa.
IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0004421 hydroxymethylglutaryl-CoA synthase activity    
Biological Process GO:0008299 isoprenoid biosynthetic process    
HMMPfam PF01154 HMG_CoA_synt_N 8.9e-40 6-106
IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal
Molecular Function GO:0004421 hydroxymethylglutaryl-CoA synthase activity    
Biological Process GO:0008299 isoprenoid biosynthetic process    
HMMPfam PF08540 HMG_CoA_synt_C 1.9e-35 125-226
IPR016038 Thiolase-like, subgroup
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.40.47.10 no description 2.2e-05 6-104
125-147
IPR016039 Thiolase-like
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF53901 Thiolase-like 1.3e-15 105-226
7-125
no_ID  
HMMPanther PTHR11877 HYDROXYMETHYLGLUTARYL-COA 6.7e-57 6-104
HMMPanther PTHR11877:SF10 SUBFAMILY 6.7e-57 6-104
Pseudomolecule
Chromosome Start End Strand
21753003717534508-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 6373274 6373634 . - . ID=Zjn_sc00003.1.g14560.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 6373782 6373931 . - . ID=Zjn_sc00003.1.g14560.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 6374892 6374951 . - . ID=Zjn_sc00003.1.g14560.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 6375651 6375783 . - . ID=Zjn_sc00003.1.g14560.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 6376413 6376519 . - . ID=Zjn_sc00003.1.g14560.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 6377674 6377745 . - . ID=Zjn_sc00003.1.g14560.1.sm.mkhc:exon:1

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