Z. japonica Nagirizaki
Zjn_sc00003.1.g14030.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G17990.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 341 91 223 6e-50 130.2 29.6 33.7
Subject 444 111 243
Annot | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957330-5959681 FORWARD LENGTH=444
NR gb|AFW89746.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 341 1 335 e-111 96.8 71.8 77.7
Subject 330 1 326
Annot hypothetical protein ZEAMMB73_227948 [Zea mays]
IRGSP Os03t0126000-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 341 221 335 2e-51 115.8 30.2 31.7
Subject 395 259 393
Annot
Sbicolor Sobic.001G523800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 341 1 223 2e-55 114.4 43.1 46
Subject 390 1 191
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g14030.1.sm.mkhc length: 341 aa.
IPR000312 Glycosyl transferase, family 3
method AccNumber shortName E-value location
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016757 transferase activity, transferring glycosyl groups    
Gene3D G3DSA:3.40.1030.10 no description 4.9e-31 158-221
222-339
HMMPfam PF00591 Glycos_transf_3 1.9e-12 157-222
252-323
superfamily SSF52418 Nucleoside 1.4e-44 156-340
IPR017459 Glycosyl transferase family 3, N-terminal domain
HMMPfam PF02885 Glycos_trans_3N 5.3e-13 91-148
superfamily SSF47648 Nucleoside 1.1e-12 86-154
no_ID  
Coil coil coiled-coil NA 92-120
Gene3D G3DSA:1.20.970.10 no description 5.2e-13 92-149
HMMPanther PTHR11922 GMP 3.2e-59 55-335
HMMPanther PTHR11922:SF6 TRP1 3.2e-59 55-335
Seg seg seg NA 4-17
21-52
103-124
179-191
194-205
289-301
Pseudomolecule
Chromosome Start End Strand
21732254617326278+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 6165783 6166052 . + . ID=Zjn_sc00003.1.g14030.1.sm.mkhc:exon:1
Zjn_sc00003.1 maker exon 6166063 6166206 . + . ID=Zjn_sc00003.1.g14030.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 6166301 6166462 . + . ID=Zjn_sc00003.1.g14030.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 6166550 6166633 . + . ID=Zjn_sc00003.1.g14030.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 6168191 6168281 . + . ID=Zjn_sc00003.1.g14030.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 6168792 6168910 . + . ID=Zjn_sc00003.1.g14030.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 6169273 6169407 . + . ID=Zjn_sc00003.1.g14030.1.sm.mkhc:exon:7
Zjn_sc00003.1 maker exon 6169495 6169515 . + . ID=Zjn_sc00003.1.g14030.1.sm.mkhc:exon:8

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