Z. japonica Nagirizaki
Zjn_sc00003.1.g13110.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G05710.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 850 78 812 0.0 116.5 68.2 76.6
Subject 990 77 979
Annot | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990
NR ref|NP_001048898.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 850 1 812 0.0 116 82.8 86.8
Subject 986 1 975
Annot Os03g0136900 [Oryza sativa Japonica Group] gi|108706066|gb|ABF93861.1| Aconitate hydratase, cytoplasmic, putative, expressed [Oryza sativa Japonica Group] gi|113547369|dbj|BAF10812.1| Os03g0136900 [Oryza sativa Japonica Group]
IRGSP Os03t0136900-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 850 1 812 0.0 116 82.8 86.8
Subject 986 1 975
Annot
Sbicolor Sobic.007G068100.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 850 63 812 0.0 117.2 69.2 77.1
Subject 996 66 983
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g13110.1.sm.mkhc length: 850 aa.
IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel
method AccNumber shortName E-value location
Biological Process GO:0008152 metabolic process    
HMMPfam PF00694 Aconitase_C 3.5e-45 622-750
IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
Biological Process GO:0008152 metabolic process    
FPrintScan PR00415 ACONITASE 2.6e-16 241-254
265-273
294-307
308-323
HMMPfam PF00330 Aconitase 5.5e-07 153-378
383-464
465-493
superfamily SSF53732 Aconitase 5.2e-153 100-559
IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.20.19.10 no description 3.2e-73 569-811
superfamily SSF52016 LeuD/IlvD-like 2.5e-83 560-809
IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.30.499.10 no description 7.4e-13 118-329
401-464
465-505
IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.40.1060.10 no description 9.5e-08 330-365
IPR015934 Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase
Biological Process GO:0008152 metabolic process    
HMMPanther PTHR11670:SF1 ACONITASE 0 82-809
IPR015937 Aconitase/isopropylmalate dehydratase
Biological Process GO:0008152 metabolic process    
HMMPanther PTHR11670 ACONITASE 0 82-809
IPR018136 Aconitase family, 4Fe-4S cluster binding site
PatternScan PS00450 ACONITASE_1 NA 409-425
no_ID  
Seg seg seg NA 2-95
311-327
Pseudomolecule
Chromosome Start End Strand
21695718316964329+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 5800420 5800702 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:1
Zjn_sc00003.1 maker exon 5800804 5800911 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 5801357 5801517 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 5801968 5802060 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 5802577 5802762 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 5802851 5803012 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 5803391 5803480 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:7
Zjn_sc00003.1 maker exon 5803844 5803900 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:8
Zjn_sc00003.1 maker exon 5804384 5804569 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:9
Zjn_sc00003.1 maker exon 5804808 5804875 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:10
Zjn_sc00003.1 maker exon 5805184 5805271 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:11
Zjn_sc00003.1 maker exon 5805622 5805720 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:12
Zjn_sc00003.1 maker exon 5805821 5806300 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:13
Zjn_sc00003.1 maker exon 5806399 5806497 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:14
Zjn_sc00003.1 maker exon 5806596 5806838 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:15
Zjn_sc00003.1 maker exon 5806927 5806951 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:16
Zjn_sc00003.1 maker exon 5807442 5807566 . + . ID=Zjn_sc00003.1.g13110.1.sm.mkhc:exon:17

Top