Z. japonica Nagirizaki
Zjn_sc00003.1.g12500.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G02260.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
459 |
1 |
374 |
e-106 |
109.4 |
44.9 |
54.9 |
| Subject |
502 |
1 |
321 |
|
| Annot |
| Symbols: | Divalent ion symporter | chr1:440757-442459 REVERSE LENGTH=502 |
| NR |
ref|XP_004985708.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
459 |
1 |
375 |
0.0 |
121.1 |
74.7 |
78 |
| Subject |
556 |
1 |
372 |
|
| Annot |
PREDICTED: putative transporter arsB isoform X1 [Setaria italica] gi|514822079|ref|XP_004985710.1| PREDICTED: putative transporter arsB isoform X1 [Setaria italica] gi|514822081|ref|XP_004985711.1| PREDICTED: putative transporter arsB isoform X1 [Setaria italica] gi|514822083|ref|XP_004985712.1| PREDICTED: putative transporter arsB isoform X1 [Setaria italica] gi|514822085|ref|XP_004985713.1| PREDICTED: putative transporter arsB isoform X1 [Setaria italica] gi|514822087|ref|XP_004985714.1| PREDICTED: putative transporter arsB isoform X1 [Setaria italica] |
| IRGSP |
Os03t0147400-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
459 |
1 |
375 |
0.0 |
121.4 |
73.2 |
76.5 |
| Subject |
557 |
1 |
373 |
|
| Annot |
|
| Sbicolor |
Sobic.001G504000.4.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
459 |
1 |
375 |
0.0 |
121.1 |
74.3 |
77.8 |
| Subject |
556 |
1 |
372 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g12500.1.sm.mkhc |
length: 459 aa. |
| IPR004680 |
Citrate transporter-like domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF03600 |
CitMHS |
3.8e-65 |
16-376 |
| no_ID |
|
| HMMPanther |
PTHR10283 |
SOLUTE |
8.5e-181 |
1-459 |
| HMMPanther |
PTHR10283:SF40 |
ARSENITE |
8.5e-181 |
1-459 |
| Seg |
seg |
seg |
NA |
341-354 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 16730025 | 16732707 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker |
exon |
5573262 |
5574372 |
. |
+ |
. |
ID=Zjn_sc00003.1.g12500.1.sm.mkhc:exon:1 |
| Zjn_sc00003.1 |
maker |
exon |
5575417 |
5575944 |
. |
+ |
. |
ID=Zjn_sc00003.1.g12500.1.sm.mkhc:exon:2 |