Z. japonica Nagirizaki
Zjn_sc00003.1.g12210.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 162 4 160 1e-24 85.8 40.1 53.1
Subject 139 14 133
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139
NR ref|XP_002468496.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 162 1 161 2e-35 90.1 58 61.1
Subject 146 1 126
Annot hypothetical protein SORBIDRAFT_01g046920 [Sorghum bicolor] gi|241922350|gb|EER95494.1| hypothetical protein SORBIDRAFT_01g046920 [Sorghum bicolor]
IRGSP Os04t0257500-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 162 1 161 2e-31 79 54.3 62.3
Subject 128 1 118
Annot
Sbicolor Sobic.001G502300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 162 1 161 3e-38 82.1 58 61.1
Subject 133 1 126
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g12210.1.sm.mk length: 162 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 5.6e-11 10-21
33-49
Gene3D G3DSA:3.30.730.10 no description 4.3e-30 9-68
HMMPfam PF00847 AP2 1.4e-16 9-59
HMMSmart SM00380 DNA-binding 2.1e-34 9-73
ProfileScan PS51032 AP2_ERF 23.973 9-67
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.5e-23 8-70
no_ID  
HMMPanther PTHR31985 FAMILY 6.3e-24 2-67
Seg seg seg NA 5-16
70-90
121-127
Pseudomolecule
Chromosome Start End Strand
21663314816633636-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker_non_over exon 5476385 5476873 . - . ID=Zjn_sc00003.1.g12210.1.sm.mk:exon:1

Top