Z. japonica Nagirizaki
Zjn_sc00003.1.g12120.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G03415.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
238 |
4 |
123 |
8e-32 |
161.8 |
32.4 |
35.3 |
| Subject |
385 |
43 |
145 |
|
| Annot |
| Symbols: DPB, ATDPB | Transcription factor DP | chr5:842842-845200 FORWARD LENGTH=385 |
| NR |
ref|NP_001169170.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
238 |
6 |
134 |
6e-52 |
162.6 |
45.8 |
49.6 |
| Subject |
387 |
56 |
183 |
|
| Annot |
uncharacterized protein LOC100383020 [Zea mays] gi|223975291|gb|ACN31833.1| unknown [Zea mays] gi|413957023|gb|AFW89672.1| hypothetical protein ZEAMMB73_476307 [Zea mays] |
| IRGSP |
Os03t0152100-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
238 |
34 |
132 |
3e-45 |
45 |
36.1 |
39.1 |
| Subject |
107 |
9 |
107 |
|
| Annot |
|
| Sbicolor |
Sobic.001G501000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
238 |
6 |
134 |
1e-51 |
164.7 |
44.5 |
49.2 |
| Subject |
392 |
61 |
189 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g12120.1.sm.mkhc |
length: 238 aa. |
| IPR003316 |
Transcription factor E2F/dimerisation partner (TDP) |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Cellular Component |
GO:0005667 |
transcription factor complex |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02319 |
E2F_TDP |
4.1e-06 |
79-118 |
| IPR011991 |
Winged helix-turn-helix DNA-binding domain |
| Gene3D |
G3DSA:1.10.10.10 |
no description |
5.9e-18 |
73-131 |
| IPR014889 |
Transcription factor DP, C-terminal |
| HMMPfam |
PF08781 |
DP |
8.2e-09 |
144-169 |
| IPR015648 |
Transcription factor DP |
| HMMPanther |
PTHR12548 |
TRANSCRIPTION |
9.9e-36 |
32-120 |
| no_ID |
|
| HMMPanther |
PTHR12548:SF9 |
TRANSCRIPTION |
9.9e-36 |
32-120 |
| Seg |
seg |
seg |
NA |
14-38 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 16579698 | 16583362 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker |
exon |
5422935 |
5423148 |
. |
- |
. |
ID=Zjn_sc00003.1.g12120.1.sm.mkhc:exon:7 |
| Zjn_sc00003.1 |
maker |
exon |
5423949 |
5424019 |
. |
- |
. |
ID=Zjn_sc00003.1.g12120.1.sm.mkhc:exon:6 |
| Zjn_sc00003.1 |
maker |
exon |
5424318 |
5424332 |
. |
- |
. |
ID=Zjn_sc00003.1.g12120.1.sm.mkhc:exon:5 |
| Zjn_sc00003.1 |
maker |
exon |
5424672 |
5424779 |
. |
- |
. |
ID=Zjn_sc00003.1.g12120.1.sm.mkhc:exon:4 |
| Zjn_sc00003.1 |
maker |
exon |
5425299 |
5425342 |
. |
- |
. |
ID=Zjn_sc00003.1.g12120.1.sm.mkhc:exon:3 |
| Zjn_sc00003.1 |
maker |
exon |
5425578 |
5425654 |
. |
- |
. |
ID=Zjn_sc00003.1.g12120.1.sm.mkhc:exon:2 |
| Zjn_sc00003.1 |
maker |
exon |
5426412 |
5426599 |
. |
- |
. |
ID=Zjn_sc00003.1.g12120.1.sm.mkhc:exon:1 |