Z. japonica Nagirizaki
Zjn_sc00003.1.g11200.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G61410.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
139 |
8 |
135 |
8e-50 |
202.2 |
82.7 |
89.2 |
| Subject |
281 |
44 |
267 |
|
| Annot |
| Symbols: RPE | D-ribulose-5-phosphate-3-epimerase | chr5:24684085-24685836 REVERSE LENGTH=281 |
| NR |
ref|XP_010926585.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
139 |
8 |
135 |
3e-55 |
173.4 |
84.9 |
89.9 |
| Subject |
241 |
51 |
227 |
|
| Annot |
PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic isoform X2 [Elaeis guineensis] |
| IRGSP |
Os03t0169100-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
139 |
4 |
135 |
3e-55 |
197.1 |
89.2 |
94.2 |
| Subject |
274 |
33 |
260 |
|
| Annot |
|
| Sbicolor |
Sobic.001G491000.2.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
139 |
4 |
135 |
4e-53 |
197.1 |
86.3 |
92.1 |
| Subject |
274 |
33 |
260 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g11200.1.am.mkhc |
length: 139 aa. |
| IPR000056 |
Ribulose-phosphate 3-epimerase-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| Molecular Function |
GO:0016857 |
racemase and epimerase activity, acting on carbohydrates and derivatives |
|
|
| HMMPanther |
PTHR11749 |
RIBULOSE-5-PHOSPHATE-3-EPIMERASE |
9.6e-43 |
55-136 |
| HMMPfam |
PF00834 |
Ribul_P_3_epim |
5.8e-29 |
54-128 |
| PatternScan |
PS01086 |
RIBUL_P_3_EPIMER_2 |
NA |
59-81 |
| IPR011060 |
Ribulose-phosphate binding barrel |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0008152 |
metabolic process |
|
|
| superfamily |
SSF51366 |
Ribulose-phoshate |
1e-23 |
50-133 |
| IPR013785 |
Aldolase-type TIM barrel |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:3.20.20.70 |
no description |
1.5e-31 |
50-135 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 16224525 | 16227593 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker |
exon |
5067762 |
5068363 |
. |
- |
. |
ID=Zjn_sc00003.1.g11200.1.am.mkhc:exon:6 |
| Zjn_sc00003.1 |
maker |
exon |
5068500 |
5068556 |
. |
- |
. |
ID=Zjn_sc00003.1.g11200.1.am.mkhc:exon:5 |
| Zjn_sc00003.1 |
maker |
exon |
5068631 |
5068740 |
. |
- |
. |
ID=Zjn_sc00003.1.g11200.1.am.mkhc:exon:4 |
| Zjn_sc00003.1 |
maker |
exon |
5069773 |
5069818 |
. |
- |
. |
ID=Zjn_sc00003.1.g11200.1.am.mkhc:exon:3 |
| Zjn_sc00003.1 |
maker |
exon |
5070285 |
5070393 |
. |
- |
. |
ID=Zjn_sc00003.1.g11200.1.am.mkhc:exon:2 |
| Zjn_sc00003.1 |
maker |
exon |
5070823 |
5070830 |
. |
- |
. |
ID=Zjn_sc00003.1.g11200.1.am.mkhc:exon:1 |