Z. japonica Nagirizaki
Zjn_sc00003.1.g11160.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT1G24070.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
440 |
1 |
432 |
e-124 |
125.5 |
53.6 |
69.1 |
| Subject |
552 |
76 |
552 |
|
| Annot |
| Symbols: ATCSLA10, CSLA10 | cellulose synthase-like A10 | chr1:8516437-8519734 REVERSE LENGTH=552 |
| NR |
ref|XP_002468429.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
440 |
1 |
439 |
0.0 |
124.3 |
84.3 |
90.5 |
| Subject |
547 |
48 |
546 |
|
| Annot |
hypothetical protein SORBIDRAFT_01g045850 [Sorghum bicolor] gi|241922283|gb|EER95427.1| hypothetical protein SORBIDRAFT_01g045850 [Sorghum bicolor] |
| IRGSP |
Os03t0169500-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
440 |
134 |
436 |
e-163 |
124.8 |
61.1 |
65.7 |
| Subject |
549 |
243 |
548 |
|
| Annot |
|
| Sbicolor |
Sobic.001G490000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
440 |
1 |
439 |
0.0 |
124.3 |
84.3 |
90.5 |
| Subject |
547 |
48 |
546 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g11160.1.sm.mk |
length: 440 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.90.550.10 |
no description |
0.00032 |
159-251 |
| HMMPanther |
PTHR32044 |
FAMILY |
3.6e-230 |
1-437 |
| HMMPanther |
PTHR32044:SF0 |
SUBFAMILY |
3.6e-230 |
1-437 |
| HMMPfam |
PF13632 |
Glyco_trans_2_3 |
7.2e-19 |
141-301 |
| superfamily |
SSF53448 |
Nucleotide-diphospho-sugar |
1.9e-22 |
57-287 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 16205879 | 16209232 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5049116 |
5049287 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:9 |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5049378 |
5049578 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:8 |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5049684 |
5049883 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:7 |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5049984 |
5050085 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:6 |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5050163 |
5050299 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:5 |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5050370 |
5050518 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:4 |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5051119 |
5051171 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:3 |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5051584 |
5051682 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:2 |
| Zjn_sc00003.1 |
maker_non_over |
exon |
5052260 |
5052469 |
. |
- |
. |
ID=Zjn_sc00003.1.g11160.1.sm.mk:exon:1 |