Z. japonica Nagirizaki
Zjn_sc00003.1.g10980.1.sm.mk ( /TE )
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G28857.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 85 1 84 5e-22 108.2 60 81.2
Subject 92 1 91
Annot | Symbols: | basic helix-loop-helix (bHLH) DNA-binding family protein | chr3:10855781-10856313 REVERSE LENGTH=92
NR gb|AAM74282.1|AC083943_22 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 85 1 85 3e-30 103.5 87.1 95.3
Subject 88 1 88
Annot Hypothetical protein similar to putative DNA binding proteins [Oryza sativa Japonica Group] gi|31431968|gb|AAP53674.1| bHLH family protein, putative, expressed [Oryza sativa Japonica Group] gi|125531848|gb|EAY78413.1| hypothetical protein OsI_33502 [Oryza sativa Indica Group] gi|125574725|gb|EAZ16009.1| hypothetical protein OsJ_31454 [Oryza sativa Japonica Group]
IRGSP Os10t0403800-00_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 85 1 85 2e-33 103.5 87.1 95.3
Subject 88 1 88
Annot
Sbicolor Sobic.001G488400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 85 2 85 6e-31 101.2 94.1 96.5
Subject 86 3 86
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g10980.1.sm.mk length: 85 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 5.7e-09 11-69
HMMPfam PF00010 HLH 1.6e-06 11-52
ProfileScan PS50888 BHLH 10.036 1-52
superfamily SSF47459 HLH, 1.3e-06 11-85
no_ID  
Coil coil coiled-coil NA 49-70
Seg seg seg NA 27-39
Pseudomolecule
Chromosome Start End Strand
21613811416138548-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker_non_over exon 4981351 4981503 . - . ID=Zjn_sc00003.1.g10980.1.sm.mk:exon:2
Zjn_sc00003.1 maker_non_over exon 4981681 4981785 . - . ID=Zjn_sc00003.1.g10980.1.sm.mk:exon:1

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