Z. japonica Nagirizaki
Zjn_sc00003.1.g10690.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G17420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 769 43 746 0.0 119.5 60.5 72.6
Subject 919 42 784
Annot | Symbols: LOX3 | lipoxygenase 3 | chr1:5977512-5981384 FORWARD LENGTH=919
NR ref|XP_004985496.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 769 3 744 0.0 119.2 86.6 89.7
Subject 917 5 779
Annot PREDICTED: probable lipoxygenase 6 [Setaria italica]
IRGSP Os03t0179900-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 769 24 744 0.0 119.4 83.5 87
Subject 918 22 777
Annot
Sbicolor Sobic.001G483400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 769 1 744 0.0 120.2 86.7 90.1
Subject 924 1 786
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g10690.1.sm.mkhc length: 769 aa.
IPR000907 Lipoxygenase
method AccNumber shortName E-value location
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMPanther PTHR11771 LIPOXYGENASE 1.2e-297 95-744
IPR001024 PLAT/LH2 domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.60.60.20 no description 2.2e-55 85-233
HMMPfam PF01477 PLAT 1.4e-14 140-219
HMMSmart SM00308 Lipoxygenase 2.3e-32 81-221
ProfileScan PS50095 PLAT 17.883 97-220
IPR001246 Lipoxygenase, plant
Molecular Function GO:0005506 iron ion binding    
Molecular Function GO:0016165 lipoxygenase activity    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00468 PLTLPOXGNASE 1.9e-61 190-208
216-237
255-271
287-306
355-376
400-416
439-458
506-530
IPR008976 Lipase/lipooxygenase, PLAT/LH2
superfamily SSF49723 Lipase/lipooxygenase 1.8e-48 81-224
IPR013819 Lipoxygenase, C-terminal
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00087 LIPOXYGENASE 6.3e-20 552-569
570-587
590-610
HMMPfam PF00305 Lipoxygenase 1.4e-46 233-630
631-745
ProfileScan PS51393 LIPOXYGENASE_3 192.027 223-769
superfamily SSF48484 Lipoxigenase 1.7e-196 225-758
IPR020833 Lipoxygenase, iron binding site
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00711 LIPOXYGENASE_1 NA 570-584
IPR020834 Lipoxygenase, conserved site
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00081 LIPOXYGENASE_2 NA 597-607
IPR027433 Lipoxygenase, domain 3
Gene3D G3DSA:4.10.372.10 no description 7.1e-26 343-431
no_ID  
Gene3D G3DSA:1.20.245.10 no description 5.7e-44 568-630
631-761
Gene3D G3DSA:3.10.450.60 no description 9.7e-51 433-566
Gene3D G3DSA:4.10.375.10 no description 5.3e-40 234-325
HMMPanther PTHR11771:SF2 LIPOXYGENASE 1.2e-297 95-744
Seg seg seg NA 11-26
35-47
Pseudomolecule
Chromosome Start End Strand
21602949316034970-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 4872730 4872808 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:10
Zjn_sc00003.1 maker exon 4873497 4873838 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:9
Zjn_sc00003.1 maker exon 4874054 4874215 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:8
Zjn_sc00003.1 maker exon 4874332 4874636 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:7
Zjn_sc00003.1 maker exon 4874727 4874834 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 4874955 4875040 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 4875119 4875442 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 4876066 4876303 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 4876762 4877045 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 4877826 4878207 . - . ID=Zjn_sc00003.1.g10690.1.sm.mkhc:exon:1

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