Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00003.1.g10330.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00003.1)

BLAST

TAIR10	AT4G33360.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	313	1	313	e-104	109.9	61.7	75.1
		Subject	344	13	344
		Annot	\| Symbols: FLDH \| NAD(P)-binding Rossmann-fold superfamily protein \| chr4:16067989-16069374 REVERSE LENGTH=344
NR	ref\|XP_002468378.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	313	1	313	e-143	123	80.8	88.8
		Subject	385	54	385
		Annot	hypothetical protein SORBIDRAFT_01g044900 [Sorghum bicolor] gi\|241922232\|gb\|EER95376.1\| hypothetical protein SORBIDRAFT_01g044900 [Sorghum bicolor]
IRGSP	Os03t0184550-01_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	313	1	313	e-133	108.9	75.1	84.7
		Subject	341	1	341
		Annot
Sbicolor	Sobic.001G479500.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	313	1	313	e-146	123	80.8	88.8
		Subject	385	54	385
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001509	NAD-dependent epimerase/dehydratase
Zjn_sc00003.1.g10330.1.am.mkhc				length: 313 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0044237	cellular metabolic process
Molecular Function	GO:0050662	coenzyme binding
HMMPfam	PF01370	Epimerase	2.2e-28	3-175
IPR016040	NAD(P)-binding domain
Gene3D	G3DSA:3.40.50.720	no description	1.2e-53	1-302
no_ID
HMMPanther	PTHR10366	NAD	3.1e-119	1-306
HMMPanther	PTHR10366:SF57	DTDP-GLUCOSE	3.1e-119	1-306
Seg	seg	seg	NA	13-24 146-158
superfamily	SSF51735	NAD(P)-binding	6.3e-66	2-306

Pseudomolecule

Chromosome	Start	End	Strand
2	15887917	15890390	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00003.1	maker	exon	4731154	4731494	.	-	.	ID=Zjn_sc00003.1.g10330.1.am.mkhc:exon:5
Zjn_sc00003.1	maker	exon	4731594	4731839	.	-	.	ID=Zjn_sc00003.1.g10330.1.am.mkhc:exon:4
Zjn_sc00003.1	maker	exon	4732111	4732275	.	-	.	ID=Zjn_sc00003.1.g10330.1.am.mkhc:exon:3
Zjn_sc00003.1	maker	exon	4732396	4732521	.	-	.	ID=Zjn_sc00003.1.g10330.1.am.mkhc:exon:2
Zjn_sc00003.1	maker	exon	4733364	4733627	.	-	.	ID=Zjn_sc00003.1.g10330.1.am.mkhc:exon:1