Z. japonica Nagirizaki
Zjn_sc00003.1.g10100.1.sm.mkhc ( /TE )
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G49980.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 613 1 613 0.0 101 53.2 70.1
Subject 619 8 619
Annot | Symbols: AFB5 | auxin F-box protein 5 | chr5:20334420-20336531 REVERSE LENGTH=619
NR ref|XP_002465737.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 613 5 613 0.0 98.2 80.4 86.5
Subject 602 4 602
Annot hypothetical protein SORBIDRAFT_01g044720 [Sorghum bicolor] gi|241919591|gb|EER92735.1| hypothetical protein SORBIDRAFT_01g044720 [Sorghum bicolor]
IRGSP Os02t0759700-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 613 33 613 0.0 103.9 53.2 68.4
Subject 637 63 637
Annot
Sbicolor Sobic.001G477400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 613 5 613 0.0 98.2 80.4 86.5
Subject 602 4 602
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g10100.1.sm.mkhc length: 613 aa.
IPR006553 Leucine-rich repeat, cysteine-containing subtype
method AccNumber shortName E-value location
HMMSmart SM00367 Leucine-rich 60 134-158
160-185
411-435
471-494
495-519
520-544
no_ID  
Gene3D G3DSA:3.80.10.10 no description 3.2e-11 32-275
461-571
HMMPanther PTHR23125 F-BOX/LEUCINE 2.1e-222 32-597
HMMPanther PTHR23125:SF100PREDICTED PROTEIN 2.1e-222 32-597
Seg seg seg NA 23-34
79-99
162-176
superfamily SSF52047 RNI-like 1.2e-24 51-574
Pseudomolecule
Chromosome Start End Strand
21576876015771296+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 4611997 4612556 . + . ID=Zjn_sc00003.1.g10100.1.sm.mkhc:exon:1
Zjn_sc00003.1 maker exon 4612662 4613184 . + . ID=Zjn_sc00003.1.g10100.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 4613269 4614533 . + . ID=Zjn_sc00003.1.g10100.1.sm.mkhc:exon:3

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