Z. japonica Nagirizaki
Zjn_sc00003.1.g10080.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G24390.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 24 612 0.0 101.8 52.5 69.3
Subject 623 40 623
Annot | Symbols: | RNI-like superfamily protein | chr4:12613909-12615966 REVERSE LENGTH=623
NR ref|XP_002465737.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 1 612 0.0 98.4 80.7 88.7
Subject 602 1 602
Annot hypothetical protein SORBIDRAFT_01g044720 [Sorghum bicolor] gi|241919591|gb|EER92735.1| hypothetical protein SORBIDRAFT_01g044720 [Sorghum bicolor]
IRGSP Os02t0759700-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 32 612 0.0 104.1 53.1 69.4
Subject 637 63 637
Annot
Sbicolor Sobic.001G477400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 1 612 0.0 98.4 80.7 88.7
Subject 602 1 602
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g10080.1.sm.mkhc length: 612 aa.
IPR006553 Leucine-rich repeat, cysteine-containing subtype
method AccNumber shortName E-value location
HMMSmart SM00367 Leucine-rich 53 133-157
160-184
410-434
470-493
494-518
519-543
no_ID  
Gene3D G3DSA:3.80.10.10 no description 9.8e-13 308-444
460-571
HMMPanther PTHR23125 F-BOX/LEUCINE 4.8e-225 31-596
HMMPanther PTHR23125:SF100PREDICTED PROTEIN 4.8e-225 31-596
Seg seg seg NA 22-33
120-135
148-155
161-175
superfamily SSF52047 RNI-like 1e-24 134-577
Pseudomolecule
Chromosome Start End Strand
21576293115765450+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 4606168 4606724 . + . ID=Zjn_sc00003.1.g10080.1.sm.mkhc:exon:1
Zjn_sc00003.1 maker exon 4606831 4607353 . + . ID=Zjn_sc00003.1.g10080.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 4607442 4608687 . + . ID=Zjn_sc00003.1.g10080.1.sm.mkhc:exon:3

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