Z. japonica Nagirizaki
Zjn_sc00003.1.g09840.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G60600.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
239 |
10 |
163 |
2e-41 |
159.8 |
36 |
44.4 |
| Subject |
382 |
55 |
210 |
|
| Annot |
| Symbols: ABC4 | UbiA prenyltransferase family protein | chr1:22324807-22326759 REVERSE LENGTH=382 |
| NR |
ref|XP_004985400.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
239 |
4 |
163 |
6e-71 |
152.7 |
56.5 |
58.6 |
| Subject |
365 |
27 |
185 |
|
| Annot |
PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic [Setaria italica] |
| IRGSP |
Os03t0190100-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
239 |
18 |
163 |
3e-62 |
154.4 |
48.1 |
52.3 |
| Subject |
369 |
42 |
189 |
|
| Annot |
|
| Sbicolor |
Sobic.001G475600.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
239 |
19 |
163 |
1e-65 |
151 |
50.2 |
53.1 |
| Subject |
361 |
41 |
181 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g09840.1.sm.mkhc |
length: 239 aa. |
| IPR000537 |
UbiA prenyltransferase family |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004659 |
prenyltransferase activity |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPfam |
PF01040 |
UbiA |
1.2e-09 |
51-167 |
| no_ID |
|
| HMMPanther |
PTHR13929 |
1,4-DIHYDROXY-2-NAPHTHOATE |
2e-30 |
2-163 |
| HMMPanther |
PTHR13929:SF0 |
SUBFAMILY |
2e-30 |
2-163 |
| Seg |
seg |
seg |
NA |
2-18 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 15680413 | 15682649 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker |
exon |
4523650 |
4523823 |
. |
+ |
. |
ID=Zjn_sc00003.1.g09840.1.sm.mkhc:exon:1 |
| Zjn_sc00003.1 |
maker |
exon |
4524048 |
4524151 |
. |
+ |
. |
ID=Zjn_sc00003.1.g09840.1.sm.mkhc:exon:2 |
| Zjn_sc00003.1 |
maker |
exon |
4524235 |
4524306 |
. |
+ |
. |
ID=Zjn_sc00003.1.g09840.1.sm.mkhc:exon:3 |
| Zjn_sc00003.1 |
maker |
exon |
4524391 |
4524529 |
. |
+ |
. |
ID=Zjn_sc00003.1.g09840.1.sm.mkhc:exon:4 |
| Zjn_sc00003.1 |
maker |
exon |
4525586 |
4525626 |
. |
+ |
. |
ID=Zjn_sc00003.1.g09840.1.sm.mkhc:exon:5 |
| Zjn_sc00003.1 |
maker |
exon |
4525700 |
4525886 |
. |
+ |
. |
ID=Zjn_sc00003.1.g09840.1.sm.mkhc:exon:6 |