Z. japonica Nagirizaki
Zjn_sc00003.1.g09580.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G13700.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
320 |
1 |
297 |
1e-86 |
147.5 |
46.6 |
65.3 |
| Subject |
472 |
147 |
432 |
|
| Annot |
| Symbols: ATPAO1, APAO, PAO1 | polyamine oxidase 1 | chr5:4420222-4422974 REVERSE LENGTH=472 |
| NR |
ref|XP_004985368.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
320 |
1 |
317 |
e-154 |
158.1 |
81.3 |
89.7 |
| Subject |
506 |
182 |
499 |
|
| Annot |
PREDICTED: polyamine oxidase-like isoform X1 [Setaria italica] |
| IRGSP |
Os09t0368200-00_chr09_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
320 |
1 |
310 |
e-136 |
155 |
69.4 |
83.4 |
| Subject |
496 |
185 |
495 |
|
| Annot |
|
| Sbicolor |
Sobic.001G472000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
320 |
1 |
311 |
e-154 |
159.4 |
80.3 |
87.2 |
| Subject |
510 |
189 |
501 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g09580.1.sm.mkhc |
length: 320 aa. |
| IPR002937 |
Amine oxidase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016491 |
oxidoreductase activity |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPfam |
PF01593 |
Amino_oxidase |
2.2e-59 |
65-293 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.660.10 |
no description |
7e-66 |
34-250 |
| HMMPanther |
PTHR10742 |
AMINE |
7.8e-111 |
1-297 |
| HMMPanther |
PTHR10742:SF30 |
AMINE |
7.8e-111 |
1-297 |
| superfamily |
SSF51905 |
FAD/NAD(P)-binding |
8.1e-21 |
70-297 |
| superfamily |
SSF54373 |
FAD-linked |
3.1e-32 |
134-245 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 15574278 | 15576096 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker |
exon |
4417515 |
4417532 |
. |
- |
. |
ID=Zjn_sc00003.1.g09580.1.sm.mkhc:exon:6 |
| Zjn_sc00003.1 |
maker |
exon |
4417810 |
4417895 |
. |
- |
. |
ID=Zjn_sc00003.1.g09580.1.sm.mkhc:exon:5 |
| Zjn_sc00003.1 |
maker |
exon |
4417980 |
4418061 |
. |
- |
. |
ID=Zjn_sc00003.1.g09580.1.sm.mkhc:exon:4 |
| Zjn_sc00003.1 |
maker |
exon |
4418149 |
4418556 |
. |
- |
. |
ID=Zjn_sc00003.1.g09580.1.sm.mkhc:exon:3 |
| Zjn_sc00003.1 |
maker |
exon |
4418676 |
4418819 |
. |
- |
. |
ID=Zjn_sc00003.1.g09580.1.sm.mkhc:exon:2 |
| Zjn_sc00003.1 |
maker |
exon |
4419109 |
4419333 |
. |
- |
. |
ID=Zjn_sc00003.1.g09580.1.sm.mkhc:exon:1 |