Z. japonica Nagirizaki
Zjn_sc00003.1.g09260.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G66730.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 643 114 602 e-116 77.8 39.8 47.6
Subject 500 7 474
Annot | Symbols: | C2H2-like zinc finger protein | chr5:26641914-26643883 REVERSE LENGTH=500
NR ref|XP_004985335.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 643 111 643 0.0 83.5 65 69.1
Subject 537 1 537
Annot PREDICTED: protein indeterminate-domain 1-like [Setaria italica]
IRGSP Os03t0197800-00_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 643 139 643 e-162 85.8 53.2 59.3
Subject 552 33 552
Annot
Sbicolor Sobic.001G469100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 643 111 643 0.0 81.6 63.5 67.7
Subject 525 1 525
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g09260.1.am.mk length: 643 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 170-190
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.658 168-190
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00087 232-265
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 71 168-190
209-239
244-264
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 1.7e-128 10-300
HMMPanther PTHR10593:SF17 SUBFAMILY 1.7e-128 10-300
Seg seg seg NA 47-58
72-89
115-125
126-146
242-252
294-355
388-410
467-475
493-504
507-517
605-619
superfamily SSF57667 C2H2 0.00038 239-282
165-192
Pseudomolecule
Chromosome Start End Strand
21545521015458164-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker_non_over exon 4298447 4299300 . - . ID=Zjn_sc00003.1.g09260.1.am.mk:exon:7
Zjn_sc00003.1 maker_non_over exon 4299869 4300104 . - . ID=Zjn_sc00003.1.g09260.1.am.mk:exon:6
Zjn_sc00003.1 maker_non_over exon 4300179 4300575 . - . ID=Zjn_sc00003.1.g09260.1.am.mk:exon:5
Zjn_sc00003.1 maker_non_over exon 4300692 4300810 . - . ID=Zjn_sc00003.1.g09260.1.am.mk:exon:4
Zjn_sc00003.1 maker_non_over exon 4300938 4301067 . - . ID=Zjn_sc00003.1.g09260.1.am.mk:exon:3
Zjn_sc00003.1 maker_non_over exon 4301137 4301240 . - . ID=Zjn_sc00003.1.g09260.1.am.mk:exon:2
Zjn_sc00003.1 maker_non_over exon 4301310 4301401 . - . ID=Zjn_sc00003.1.g09260.1.am.mk:exon:1

Top