Z. japonica Nagirizaki
Zjn_sc00003.1.g08860.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G70210.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 543 200 414 1e-16 62.4 13.8 18
Subject 339 80 250
Annot | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 | chr1:26440015-26441980 FORWARD LENGTH=339
NR ref|XP_004985289.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 543 136 543 e-107 63 42.2 47.5
Subject 342 21 342
Annot PREDICTED: cyclin-D5-3-like [Setaria italica]
IRGSP Os03t0203800-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 543 122 543 9e-82 63.5 35.7 44.9
Subject 345 1 345
Annot
Sbicolor Sobic.001G464800.2.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 543 130 543 4e-90 63.2 38.7 45.3
Subject 343 14 343
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g08860.1.am.mk length: 543 aa.
IPR006671 Cyclin, N-terminal
method AccNumber shortName E-value location
HMMPfam PF00134 Cyclin_N 1.1e-08 290-347
IPR013763 Cyclin-like
Gene3D G3DSA:1.10.472.10 no description 4.8e-05 199-341
342-428
superfamily SSF47954 Cyclin-like 9.8e-15 231-355
no_ID  
HMMPanther PTHR10177 CYCLINE 4.4e-27 233-519
HMMPanther PTHR10177:SF76 CYCLIN-D 4.4e-27 233-519
Seg seg seg NA 41-59
74-82
96-114
125-135
142-171
262-276
358-379
454-468
Pseudomolecule
Chromosome Start End Strand
21530081415302964+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker_non_over exon 4144051 4144746 . + . ID=Zjn_sc00003.1.g08860.1.am.mk:exon:1
Zjn_sc00003.1 maker_non_over exon 4144777 4144941 . + . ID=Zjn_sc00003.1.g08860.1.am.mk:exon:2
Zjn_sc00003.1 maker_non_over exon 4144985 4145276 . + . ID=Zjn_sc00003.1.g08860.1.am.mk:exon:3
Zjn_sc00003.1 maker_non_over exon 4145365 4145501 . + . ID=Zjn_sc00003.1.g08860.1.am.mk:exon:4
Zjn_sc00003.1 maker_non_over exon 4145634 4145869 . + . ID=Zjn_sc00003.1.g08860.1.am.mk:exon:5
Zjn_sc00003.1 maker_non_over exon 4146096 4146201 . + . ID=Zjn_sc00003.1.g08860.1.am.mk:exon:6

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