Z. japonica Nagirizaki
Zjn_sc00003.1.g08050.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G51340.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 223 403 3e-58 124.8 28.2 33.6
Subject 509 307 488
Annot | Symbols: | MATE efflux family protein | chr1:19032034-19034681 FORWARD LENGTH=509
NR ref|XP_002465638.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 11 221 3e-84 138.5 41.4 45.1
Subject 565 20 234
Annot hypothetical protein SORBIDRAFT_01g042740 [Sorghum bicolor] gi|241919492|gb|EER92636.1| hypothetical protein SORBIDRAFT_01g042740 [Sorghum bicolor]
IRGSP Os03t0216700-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 201 407 3e-81 140 39 42.2
Subject 571 352 555
Annot
Sbicolor Sobic.001G454900.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 11 221 2e-87 138.5 41.4 45.1
Subject 565 20 234
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g08050.1.am.mk length: 408 aa.
no_ID  
method AccNumber shortName E-value location
HMMPanther PTHR11206 MULTIDRUG 2.7e-86 55-403
HMMPanther PTHR11206:SF47 MATE 2.7e-86 55-403
Seg seg seg NA 5-12
76-93
Pseudomolecule
Chromosome Start End Strand
21494993314952680+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker_non_over exon 3793170 3793348 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:1
Zjn_sc00003.1 maker_non_over exon 3793432 3793553 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:2
Zjn_sc00003.1 maker_non_over exon 3793667 3793876 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:3
Zjn_sc00003.1 maker_non_over exon 3793962 3794114 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:4
Zjn_sc00003.1 maker_non_over exon 3794954 3795117 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:5
Zjn_sc00003.1 maker_non_over exon 3795222 3795343 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:6
Zjn_sc00003.1 maker_non_over exon 3795443 3795506 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:7
Zjn_sc00003.1 maker_non_over exon 3795602 3795697 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:8
Zjn_sc00003.1 maker_non_over exon 3795801 3795917 . + . ID=Zjn_sc00003.1.g08050.1.am.mk:exon:9

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