Z. japonica Nagirizaki
Zjn_sc00003.1.g07780.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G16110.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
250 |
75 |
169 |
7e-24 |
265.6 |
22.8 |
28.8 |
| Subject |
664 |
237 |
337 |
|
| Annot |
| Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664 |
| NR |
ref|NP_001104861.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
250 |
72 |
209 |
8e-64 |
273.6 |
49.2 |
51.2 |
| Subject |
684 |
218 |
356 |
|
| Annot |
response regulator 8 [Zea mays] gi|13661174|dbj|BAB41137.1| response regulator 8 [Zea mays] gi|195656391|gb|ACG47663.1| two-component response regulator ARR1 [Zea mays] |
| IRGSP |
Os03t0224200-02_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
250 |
72 |
209 |
2e-65 |
276.4 |
48 |
50.8 |
| Subject |
691 |
220 |
358 |
|
| Annot |
|
| Sbicolor |
Sobic.001G451000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
250 |
32 |
209 |
2e-65 |
274.4 |
52 |
54 |
| Subject |
686 |
179 |
357 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g07780.1.sm.mkhc |
length: 250 aa. |
| IPR006447 |
Myb domain, plants |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMTigr |
TIGR01557 |
myb_SHAQKYF: |
1e-12 |
78-107 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
1.2e-13 |
78-112 |
| superfamily |
SSF46689 |
Homeodomain-like |
6.9e-09 |
79-113 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
0.00088 |
15-41 |
| HMMPanther |
PTHR31442 |
FAMILY |
9.7e-16 |
79-112 |
| Seg |
seg |
seg |
NA |
46-57 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 14787638 | 14792962 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker |
exon |
3630875 |
3630903 |
. |
- |
. |
ID=Zjn_sc00003.1.g07780.1.sm.mkhc:exon:5 |
| Zjn_sc00003.1 |
maker |
exon |
3632415 |
3632511 |
. |
- |
. |
ID=Zjn_sc00003.1.g07780.1.sm.mkhc:exon:4 |
| Zjn_sc00003.1 |
maker |
exon |
3633046 |
3633363 |
. |
- |
. |
ID=Zjn_sc00003.1.g07780.1.sm.mkhc:exon:3 |
| Zjn_sc00003.1 |
maker |
exon |
3633896 |
3633972 |
. |
- |
. |
ID=Zjn_sc00003.1.g07780.1.sm.mkhc:exon:2 |
| Zjn_sc00003.1 |
maker |
exon |
3635968 |
3636199 |
. |
- |
. |
ID=Zjn_sc00003.1.g07780.1.sm.mkhc:exon:1 |