Z. japonica Nagirizaki
Zjn_sc00003.1.g06980.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G01940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 235 51 225 4e-73 189.4 51.9 56.6
Subject 445 41 188
Annot | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger protein | chr2:432652-434917 FORWARD LENGTH=445
NR ref|XP_008660353.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 235 3 226 6e-85 190.6 75.7 79.1
Subject 448 4 223
Annot PREDICTED: protein SHOOT GRAVITROPISM 5-like [Zea mays] gi|413956419|gb|AFW89068.1| hypothetical protein ZEAMMB73_608286 [Zea mays] gi|645166061|gb|AIB04765.1| C2H2 transcription factor, partial [Zea mays]
IRGSP Os03t0237250-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 235 1 226 7e-85 186.4 77.9 81.3
Subject 438 1 217
Annot
Sbicolor Sobic.001G443000.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 235 3 226 4e-88 195.3 76.2 79.6
Subject 459 4 226
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g06980.1.am.mk length: 235 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.0001 83-105
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 85-105
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.759 83-105
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 5.4e-05 82-105
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 2.7e+02 83-105
152-182
188-215
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 9.3e-65 52-225
HMMPanther PTHR10593:SF17 SUBFAMILY 9.3e-65 52-225
Seg seg seg NA 12-52
127-147
175-186
superfamily SSF57667 C2H2 0.00068 65-105
148-210
Pseudomolecule
Chromosome Start End Strand
21443963614440426+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker_non_over exon 3282873 3283062 . + . ID=Zjn_sc00003.1.g06980.1.am.mk:exon:1
Zjn_sc00003.1 maker_non_over exon 3283146 3283663 . + . ID=Zjn_sc00003.1.g06980.1.am.mk:exon:2

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