Z. japonica Nagirizaki
Zjn_sc00003.1.g06560.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G21050.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 516 12 469 0.0 93.6 76.6 83.1
Subject 483 5 461
Annot | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:9034289-9036439 FORWARD LENGTH=483
NR ref|XP_003561828.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 516 1 515 0.0 101.7 91.1 95
Subject 525 1 521
Annot PREDICTED: auxin transporter-like protein 3 [Brachypodium distachyon]
IRGSP Os03t0244600-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 516 1 469 0.0 101.6 85.9 88.8
Subject 524 1 470
Annot
Sbicolor Sobic.001G439000.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 516 10 496 0.0 101.4 88.2 91.5
Subject 523 11 496
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g06560.1.sm.mkhc length: 516 aa.
IPR013057 Amino acid transporter, transmembrane
method AccNumber shortName E-value location
HMMPfam PF01490 Aa_trans 6.8e-76 46-436
no_ID  
HMMPanther PTHR22950 AMINO 0 12-467
HMMPanther PTHR22950:SF3 AUX1-LIKE 0 12-467
Seg seg seg NA 353-358
431-448
470-488
498-514
Pseudomolecule
Chromosome Start End Strand
21424904214252690-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 3092279 3092879 . - . ID=Zjn_sc00003.1.g06560.1.sm.mkhc:exon:7
Zjn_sc00003.1 maker exon 3093227 3093692 . - . ID=Zjn_sc00003.1.g06560.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 3094742 3094839 . - . ID=Zjn_sc00003.1.g06560.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 3094954 3095137 . - . ID=Zjn_sc00003.1.g06560.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 3095241 3095353 . - . ID=Zjn_sc00003.1.g06560.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 3095430 3095615 . - . ID=Zjn_sc00003.1.g06560.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 3095707 3095927 . - . ID=Zjn_sc00003.1.g06560.1.sm.mkhc:exon:1

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