Z. japonica Nagirizaki
Zjn_sc00003.1.g05800.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G21910.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 233 27 123 9e-31 98.7 27.9 31.8
Subject 230 50 142
Annot | Symbols: DREB26 | Integrase-type DNA-binding superfamily protein | chr1:7696655-7697347 FORWARD LENGTH=230
NR ref|XP_004984707.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 233 1 233 2e-52 103.9 64.8 75.5
Subject 242 1 242
Annot PREDICTED: ethylene-responsive transcription factor ERF014 [Setaria italica]
IRGSP Os03t0263000-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 233 24 233 1e-46 110.7 55.8 64.8
Subject 258 47 258
Annot
Sbicolor Sobic.001G428700.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 233 1 233 4e-55 105.6 66.1 74.7
Subject 246 1 246
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g05800.1.sm.mk length: 233 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.8e-08 27-38
49-65
Gene3D G3DSA:3.30.730.10 no description 4.6e-29 25-85
HMMPfam PF00847 AP2 6.7e-16 26-75
HMMSmart SM00380 DNA-binding 1e-34 26-89
ProfileScan PS51032 AP2_ERF 22.286 26-83
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.4e-21 25-86
no_ID  
HMMPanther PTHR31985 FAMILY 1.4e-28 27-156
Seg seg seg NA 57-69
114-121
137-155
170-184
Pseudomolecule
Chromosome Start End Strand
21385850613859207+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker_non_over exon 2701743 2702444 . + . ID=Zjn_sc00003.1.g05800.1.sm.mk:exon:1

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