Z. japonica Nagirizaki
Zjn_sc00003.1.g05360.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G39770.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
31 |
355 |
e-169 |
101.7 |
78.3 |
86.5 |
| Subject |
361 |
37 |
361 |
|
| Annot |
| Symbols: CYT1 | Glucose-1-phosphate adenylyltransferase family protein | chr2:16589401-16590741 FORWARD LENGTH=361 |
| NR |
ref|XP_004984923.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
30 |
355 |
0.0 |
101.7 |
88.7 |
90.1 |
| Subject |
361 |
36 |
361 |
|
| Annot |
PREDICTED: probable mannose-1-phosphate guanylyltransferase 1 [Setaria italica] gi|514820472|ref|XP_004984924.1| PREDICTED: probable mannose-1-phosphate guanylyltransferase 1 [Setaria italica] |
| IRGSP |
Os03t0268400-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
30 |
355 |
0.0 |
101.7 |
87.9 |
89.9 |
| Subject |
361 |
36 |
361 |
|
| Annot |
|
| Sbicolor |
Sobic.001G424500.2.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
30 |
355 |
0.0 |
101.7 |
87.9 |
89.9 |
| Subject |
361 |
36 |
361 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00003.1.g05360.1.sm.mkhc |
length: 355 aa. |
| IPR001451 |
Bacterial transferase hexapeptide repeat |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF00132 |
Hexapep |
1.5e-06 |
255-288 |
| IPR005835 |
Nucleotidyl transferase |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| Molecular Function |
GO:0016779 |
nucleotidyltransferase activity |
|
|
| HMMPfam |
PF00483 |
NTP_transferase |
3.8e-32 |
32-222 |
| no_ID |
|
| Gene3D |
G3DSA:2.160.10.10 |
no description |
9.6e-18 |
241-343 |
| Gene3D |
G3DSA:3.90.550.10 |
no description |
2.9e-52 |
32-229 |
| HMMPanther |
PTHR22572 |
SUGAR-1-PHOSPHATE |
4.4e-142 |
32-355 |
| HMMPanther |
PTHR22572:SF15 |
MANNOSE-1-PHOSPHATE |
4.4e-142 |
32-355 |
| Seg |
seg |
seg |
NA |
19-31 |
| superfamily |
SSF53448 |
Nucleotide-diphospho-sugar |
3.3e-50 |
25-307 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 13676894 | 13678984 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00003.1 |
maker |
exon |
2520131 |
2520223 |
. |
+ |
. |
ID=Zjn_sc00003.1.g05360.1.sm.mkhc:exon:1 |
| Zjn_sc00003.1 |
maker |
exon |
2520891 |
2520953 |
. |
+ |
. |
ID=Zjn_sc00003.1.g05360.1.sm.mkhc:exon:2 |
| Zjn_sc00003.1 |
maker |
exon |
2521050 |
2522221 |
. |
+ |
. |
ID=Zjn_sc00003.1.g05360.1.sm.mkhc:exon:3 |