Z. japonica Nagirizaki
Zjn_sc00003.1.g03650.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G33070.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 387 29 269 e-105 156.8 48.3 52.7
Subject 607 44 266
Annot | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr4:15952519-15954676 REVERSE LENGTH=607
NR sp|A2XFI3.2|PDC2_ORYSI Length Start End E-value Length(%) Iden(%) Posi(%)
Query 387 18 298 e-113 156.6 55.3 58.7
Subject 606 31 285
Annot RecName: Full=Pyruvate decarboxylase 2; Short=PDC gi|218192604|gb|EEC75031.1| hypothetical protein OsI_11123 [Oryza sativa Indica Group]
IRGSP Os03t0293500-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 387 18 298 e-116 100 55.3 58.7
Subject 387 31 285
Annot
Sbicolor Sobic.001G405500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 387 34 298 e-115 157.6 54 56.8
Subject 610 52 289
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g03650.1.sm.mkhc length: 387 aa.
IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030976 thiamine pyrophosphate binding    
HMMPfam PF02776 TPP_enzyme_N 3.2e-32 50-216
IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme
HMMPanther PTHR18968:SF4 PYRUVATE 3.7e-94 50-269
no_ID  
Gene3D G3DSA:3.40.50.970 no description 1.8e-20 49-228
267-373
HMMPanther PTHR18968 THIAMINE 3.7e-94 50-269
Seg seg seg NA 89-104
335-346
superfamily SSF52518 Thiamin 9.7e-17 38-232
270-387
Pseudomolecule
Chromosome Start End Strand
21294570112950102+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 1788938 1788947 . + . ID=Zjn_sc00003.1.g03650.1.sm.mkhc:exon:1
Zjn_sc00003.1 maker exon 1788956 1789098 . + . ID=Zjn_sc00003.1.g03650.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 1790282 1790668 . + . ID=Zjn_sc00003.1.g03650.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 1790742 1790905 . + . ID=Zjn_sc00003.1.g03650.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 1791274 1791373 . + . ID=Zjn_sc00003.1.g03650.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 1792208 1792396 . + . ID=Zjn_sc00003.1.g03650.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 1792499 1793339 . + . ID=Zjn_sc00003.1.g03650.1.sm.mkhc:exon:7

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