Z. japonica Nagirizaki
Zjn_sc00003.1.g03010.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G02110.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 524 336 426 4e-34 253.6 11.5 13.9
Subject 1329 1229 1319
Annot | Symbols: | transcription coactivators | chr4:935191-940191 FORWARD LENGTH=1329
NR ref|XP_004987034.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 524 336 522 6e-81 288.4 28.2 31.3
Subject 1511 1322 1509
Annot PREDICTED: BRCT domain-containing protein At4g02110-like [Setaria italica]
IRGSP Os03t0304400-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 524 336 522 4e-78 279 24.8 29
Subject 1462 1273 1459
Annot
Sbicolor Sobic.001G397800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 524 336 519 3e-79 286.3 26.9 30.2
Subject 1500 1304 1490
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g03010.1.sm.mkhc length: 524 aa.
IPR001357 BRCT domain
method AccNumber shortName E-value location
Gene3D G3DSA:3.40.50.10190 no description 0.00034 109-146
62-108
ProfileScan PS50172 BRCT 11.837 9-148
superfamily SSF52113 BRCT 3.1e-08 12-109
112-154
IPR001965 Zinc finger, PHD-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 1.2e-05 450-502
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 5.9e-15 433-520
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 6.5e-14 431-510
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
HMMPfam PF00628 PHD 5.5e-08 451-502
ProfileScan PS50016 ZF_PHD_2 8.814 448-504
no_ID  
HMMPanther PTHR13561 DNA 1.4e-63 336-448
HMMPanther PTHR13561:SF5 DNA 1.4e-63 336-448
Seg seg seg NA 298-311
Pseudomolecule
Chromosome Start End Strand
21266850212675029-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 1511739 1512308 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:10
Zjn_sc00003.1 maker exon 1514741 1514936 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:9
Zjn_sc00003.1 maker exon 1515273 1515345 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:8
Zjn_sc00003.1 maker exon 1515361 1515499 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:7
Zjn_sc00003.1 maker exon 1515767 1515914 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 1516041 1516088 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 1516184 1516250 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 1517775 1517883 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 1517977 1518066 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 1518132 1518266 . - . ID=Zjn_sc00003.1.g03010.1.sm.mkhc:exon:1

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